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X-RAY DIFFRACTION
Materials and Methods page
4I32
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 291.0
    Details 3M NaCl, 0.1M Na Citrate pH6, 2.5% t-butanol, 20mM OBG, 5mM DTT, 3mM sodium azide, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 93.67 α = 90
    b = 93.67 β = 90
    c = 81.83 γ = 120
     
    Space Group
    Space Group Name:    P 61
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type MAR scanner 345 mm plate
    Details VariMax-HF
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU FR-E SUPERBRIGHT
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.3
    Resolution(Low) 57.61
    Number Reflections(All) 18198
    Number Reflections(Observed) 17994
    Percent Possible(Observed) 98.9
    R Merge I(Observed) 0.12
    Redundancy 8.28
     
    High Resolution Shell Details
    Resolution(High) 2.3
    Resolution(Low) 2.38
    Percent Possible(All) 98.9
    R Merge I(Observed) 0.541
    Mean I Over Sigma(Observed) 2.8
    Redundancy 8.49
    Number Unique Reflections(All) 1797
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.3001
    Resolution(Low) 46.836
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 17937
    Number of Reflections(R-Free) 916
    Percent Reflections(Observed) 98.54
    R-Factor(Observed) 0.1997
    R-Work 0.1971
    R-Free 0.2483
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -6.8012
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -6.8012
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 13.6024
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3001
    Shell Resolution(Low) 2.4214
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2402
    R-Factor(R-Work) 0.2417
    R-Factor(R-Free) 0.3152
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4214
    Shell Resolution(Low) 2.5731
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2442
    R-Factor(R-Work) 0.2302
    R-Factor(R-Free) 0.2884
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5731
    Shell Resolution(Low) 2.7717
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2464
    R-Factor(R-Work) 0.2222
    R-Factor(R-Free) 0.315
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7717
    Shell Resolution(Low) 3.0506
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2441
    R-Factor(R-Work) 0.2081
    R-Factor(R-Free) 0.2607
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0506
    Shell Resolution(Low) 3.4919
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2455
    R-Factor(R-Work) 0.1917
    R-Factor(R-Free) 0.2646
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4919
    Shell Resolution(Low) 4.3989
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2384
    R-Factor(R-Work) 0.1666
    R-Factor(R-Free) 0.2051
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3989
    Shell Resolution(Low) 46.8452
    Number of Reflections(R-Free) 101
    Number of Reflections(R-Work) 2433
    R-Factor(R-Work) 0.2024
    R-Factor(R-Free) 0.2383
    Percent Reflections(Observed) 95.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.082
    f_dihedral_angle_d 15.408
    f_angle_d 1.27
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2832
    Nucleic Acid Atoms 0
    Heterogen Atoms 117
    Solvent Atoms 90
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MAR345dtb
    Data Reduction (intensity integration) d*TREK
    Data Reduction (data scaling) d*TREK
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    model building PHENIX
    data collection MAR345dtb