POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
4I2P
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.6
    Temperature 301.0
    Details 50 mM imidazole pH 6.6, 100 mM ammonium sulfate, 15 mM manganese sulfate, 10 mM spermine, 5 mM TCEP, 11% (w/w) PEG 8000, and 5% PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 301K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 162.65 α = 90
    b = 72.99 β = 100.59
    c = 109.6 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 0
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 270
    Collection Date 2010-07-13
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type CHESS BEAMLINE F1
    Site CHESS
    Beamline F1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.3
    Resolution(Low) 107.73
    Number Reflections(Observed) 55926
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.2964
    Resolution(Low) 41.294
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 55926
    Number of Reflections(R-Free) 2000
    Percent Reflections(Observed) 98.81
    R-Factor(Observed) 0.2175
    R-Work 0.2159
    R-Free 0.2603
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -2.3086
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -2.6254
    Anisotropic B[2][2] 1.3432
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.9654
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2964
    Shell Resolution(Low) 2.3538
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 3557
    R-Factor(R-Work) 0.2799
    R-Factor(R-Free) 0.3493
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3538
    Shell Resolution(Low) 2.4174
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 3715
    R-Factor(R-Work) 0.2708
    R-Factor(R-Free) 0.3365
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4174
    Shell Resolution(Low) 2.4885
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 3804
    R-Factor(R-Work) 0.2564
    R-Factor(R-Free) 0.2734
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4885
    Shell Resolution(Low) 2.5688
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 3849
    R-Factor(R-Work) 0.2354
    R-Factor(R-Free) 0.3056
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5688
    Shell Resolution(Low) 2.6606
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 3822
    R-Factor(R-Work) 0.2381
    R-Factor(R-Free) 0.2844
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6606
    Shell Resolution(Low) 2.7671
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 3876
    R-Factor(R-Work) 0.2326
    R-Factor(R-Free) 0.2803
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7671
    Shell Resolution(Low) 2.8931
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 3869
    R-Factor(R-Work) 0.2233
    R-Factor(R-Free) 0.2824
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8931
    Shell Resolution(Low) 3.0455
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 3894
    R-Factor(R-Work) 0.2329
    R-Factor(R-Free) 0.3007
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0455
    Shell Resolution(Low) 3.2363
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 3863
    R-Factor(R-Work) 0.2284
    R-Factor(R-Free) 0.2793
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2363
    Shell Resolution(Low) 3.486
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 3911
    R-Factor(R-Work) 0.2219
    R-Factor(R-Free) 0.2568
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.486
    Shell Resolution(Low) 3.8366
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 3908
    R-Factor(R-Work) 0.2041
    R-Factor(R-Free) 0.2486
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8366
    Shell Resolution(Low) 4.3913
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 3919
    R-Factor(R-Work) 0.1724
    R-Factor(R-Free) 0.2162
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3913
    Shell Resolution(Low) 5.5304
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 3928
    R-Factor(R-Work) 0.1753
    R-Factor(R-Free) 0.2207
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.5304
    Shell Resolution(Low) 41.3004
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 4011
    R-Factor(R-Work) 0.2391
    R-Factor(R-Free) 0.2604
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.06
    f_dihedral_angle_d 15.773
    f_angle_d 0.858
    f_bond_d 0.005
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7918
    Nucleic Acid Atoms 0
    Heterogen Atoms 31
    Solvent Atoms 300
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX (phenix.refine: 1.7.3_928)
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.3_928)
    model building PHENIX version: (phenix.refine: 1.7.3_928)
    data collection HKL-2000