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X-RAY DIFFRACTION
Materials and Methods page
4I1V
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 6.5
    Temperature 289.0
    Details BuviA.00139.a.B1 PS01581 at 26.1 mg/mL with 2 mM ADP against Morpheus screen condition F1, 10% PEG 20,000, 20% PEG 550 MME, 0.02 M each monosaccharide, 0.1 M MES/imidazole pH 6.5, crystal tracking ID 237917f1, unique puck ID beh5-16, VAPOR DIFFUSION, SITTING DROP, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 115.86 α = 90
    b = 115.86 β = 90
    c = 91.64 γ = 120
     
    Space Group
    Space Group Name:    P 32 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2012-10-18
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 5.0.1
    Wavelength List 0.9774
    Site ALS
    Beamline 5.0.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.6
    Resolution(Low) 50
    Number Reflections(All) 22230
    Number Reflections(Observed) 22169
    Percent Possible(Observed) 99.7
    R Merge I(Observed) 0.046
    B(Isotropic) From Wilson Plot 59.114
    Redundancy 5.2
     
    High Resolution Shell Details
    Resolution(High) 2.6
    Resolution(Low) 2.67
    Percent Possible(All) 99.8
    R Merge I(Observed) 0.5
    Mean I Over Sigma(Observed) 3.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.6
    Resolution(Low) 44.04
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 22169
    Number of Reflections(R-Free) 1130
    Percent Reflections(Observed) 99.73
    R-Factor(Observed) 0.2148
    R-Work 0.2128
    R-Free 0.2518
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 63.8381
    Anisotropic B[1][1] 0.69
    Anisotropic B[1][2] 0.69
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.69
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.24
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6
    Shell Resolution(Low) 2.667
    Number of Reflections(R-Free) 76
    Number of Reflections(R-Work) 1538
    R-Factor(R-Work) 0.332
    R-Factor(R-Free) 0.39
    Percent Reflections(Observed) 99.81
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_other 0.003
    r_gen_planes_refined 0.006
    r_chiral_restr 0.074
    r_dihedral_angle_4_deg 12.708
    r_dihedral_angle_3_deg 15.117
    r_dihedral_angle_2_deg 37.442
    r_dihedral_angle_1_deg 5.813
    r_angle_other_deg 0.954
    r_angle_refined_deg 1.469
    r_bond_other_d 0.004
    r_bond_refined_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2963
    Nucleic Acid Atoms 0
    Heterogen Atoms 54
    Solvent Atoms 53
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement REFMAC 5.7.0029
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5
    molecular replacement Phaser version: 2.5.1
    data reduction Xscale