X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 4.5
Temperature 289.0
Details 0.2M Lithium Sulfate, 0.1M Sodium Acetate:Acetic Acid:HCl, 50% (v/v) PEG400, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 136.64 α = 90
b = 136.64 β = 90
c = 185.63 γ = 120
Symmetry
Space Group P 32 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r mirror 2011-04-09
Diffraction Radiation
Monochromator Protocol
Si 111 crystal SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.97921 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.2 50 98.9 0.094 -- -- 4.8 100645 100645 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.2 2.24 90.2 0.545 -- 1.9 2.3 4572

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 2.201 49.892 -- 1.35 100533 100533 5020 98.76 0.1739 0.1739 0.172 0.2092 random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.2011 2.2261 -- 153 2726 0.2869 0.3683 -- 86.0
X Ray Diffraction 2.2261 2.2523 -- 168 2927 0.2684 0.3338 -- 92.0
X Ray Diffraction 2.2523 2.2797 -- 160 3062 0.2532 0.3149 -- 95.0
X Ray Diffraction 2.2797 2.3086 -- 157 3099 0.2489 0.3112 -- 97.0
X Ray Diffraction 2.3086 2.339 -- 166 3074 0.2396 0.3267 -- 98.0
X Ray Diffraction 2.339 2.371 -- 150 3207 0.2192 0.2786 -- 99.0
X Ray Diffraction 2.371 2.4049 -- 159 3187 0.2185 0.2842 -- 100.0
X Ray Diffraction 2.4049 2.4408 -- 143 3227 0.219 0.2606 -- 100.0
X Ray Diffraction 2.4408 2.4789 -- 200 3166 0.2167 0.2647 -- 100.0
X Ray Diffraction 2.4789 2.5196 -- 158 3178 0.2164 0.2525 -- 100.0
X Ray Diffraction 2.5196 2.563 -- 165 3210 0.2093 0.2719 -- 100.0
X Ray Diffraction 2.563 2.6096 -- 175 3163 0.2085 0.2661 -- 100.0
X Ray Diffraction 2.6096 2.6598 -- 158 3242 0.198 0.2663 -- 100.0
X Ray Diffraction 2.6598 2.7141 -- 160 3192 0.1967 0.216 -- 100.0
X Ray Diffraction 2.7141 2.7731 -- 148 3224 0.1981 0.2562 -- 100.0
X Ray Diffraction 2.7731 2.8376 -- 175 3213 0.1985 0.2192 -- 100.0
X Ray Diffraction 2.8376 2.9085 -- 179 3199 0.2085 0.2533 -- 100.0
X Ray Diffraction 2.9085 2.9872 -- 164 3198 0.2089 0.2512 -- 100.0
X Ray Diffraction 2.9872 3.0751 -- 169 3217 0.2114 0.2524 -- 100.0
X Ray Diffraction 3.0751 3.1743 -- 154 3249 0.1988 0.2558 -- 100.0
X Ray Diffraction 3.1743 3.2877 -- 179 3203 0.1901 0.2341 -- 100.0
X Ray Diffraction 3.2877 3.4193 -- 166 3231 0.1847 0.2203 -- 100.0
X Ray Diffraction 3.4193 3.5749 -- 170 3202 0.1609 0.2001 -- 100.0
X Ray Diffraction 3.5749 3.7633 -- 199 3224 0.1471 0.1741 -- 100.0
X Ray Diffraction 3.7633 3.999 -- 187 3212 0.137 0.1679 -- 100.0
X Ray Diffraction 3.999 4.3076 -- 172 3246 0.1316 0.1624 -- 100.0
X Ray Diffraction 4.3076 4.7408 -- 173 3248 0.1241 0.1458 -- 99.0
X Ray Diffraction 4.7408 5.4261 -- 157 3285 0.1419 0.1857 -- 100.0
X Ray Diffraction 5.4261 6.8336 -- 168 3329 0.159 0.1823 -- 100.0
X Ray Diffraction 6.8336 49.9051 -- 188 3373 0.1674 0.1994 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 7.5273
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 7.5273
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -15.0546
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.067
f_dihedral_angle_d 14.421
f_angle_d 1.026
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9926
Nucleic Acid Atoms 0
Heterogen Atoms 372
Solvent Atoms 243

Software

Computing
Computing Package Purpose
sbc-collect Data Collection
HKL-3000 Data Reduction (intensity integration)
HKL-3000 Data Reduction (data scaling)
SHELXD/MLPHARE/DM/ARP/wARP/HKL3000 Structure Solution
PHENIX (phenix.refine: 1.7.1_743) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.1_743) refinement
SHELXD/MLPHARE/DM/ARP/wARP/HKL3000 model building
sbc-collect data collection