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X-RAY DIFFRACTION
Materials and Methods page
4HZK
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 9
    Temperature 293.0
    Details 22% Polyacrylic acid 5,100, 20 mM MgCl2, 100 mM CHES 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 89.82 α = 90
    b = 89.82 β = 90
    c = 316.2 γ = 120
     
    Space Group
    Space Group Name:    P 31
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type DECTRIS PILATUS 6M
    Collection Date 2012-09-20
     
    Diffraction Radiation
    Monochromator Monochromator
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.1
    Wavelength List 1.2395
    Site BESSY
    Beamline 14.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 3.1
    Resolution(Low) 50
    Number Reflections(All) 51788
    Number Reflections(Observed) 50204
    Percent Possible(Observed) 96.9
    R Merge I(Observed) 0.042
    B(Isotropic) From Wilson Plot 98.94
     
    High Resolution Shell Details
    Resolution(High) 3.1
    Resolution(Low) 3.2
    Percent Possible(All) 98.5
    R Merge I(Observed) 0.562
    Mean I Over Sigma(Observed) 2.18
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.1
    Resolution(Low) 49.07
    Cut-off Sigma(F) 1.98
    Number of Reflections(all) 51788
    Number of Reflections(Observed) 50204
    Number of Reflections(R-Free) 2048
    Percent Reflections(Observed) 97.09
    R-Factor(Observed) 0.2192
    R-Work 0.2161
    R-Free 0.2356
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 112.105
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1005
    Shell Resolution(Low) 3.178
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 3426
    R-Factor(R-Work) 0.3261
    R-Factor(R-Free) 0.3425
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.178
    Shell Resolution(Low) 3.2639
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 3492
    R-Factor(R-Work) 0.3115
    R-Factor(R-Free) 0.3483
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2639
    Shell Resolution(Low) 3.3599
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 3505
    R-Factor(R-Work) 0.2945
    R-Factor(R-Free) 0.3026
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3599
    Shell Resolution(Low) 3.4684
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 3505
    R-Factor(R-Work) 0.2825
    R-Factor(R-Free) 0.3151
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4684
    Shell Resolution(Low) 3.5923
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 3514
    R-Factor(R-Work) 0.2735
    R-Factor(R-Free) 0.2641
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5923
    Shell Resolution(Low) 3.736
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 3465
    R-Factor(R-Work) 0.2624
    R-Factor(R-Free) 0.2914
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.736
    Shell Resolution(Low) 3.9059
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 3464
    R-Factor(R-Work) 0.2537
    R-Factor(R-Free) 0.2304
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9059
    Shell Resolution(Low) 4.1117
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 3425
    R-Factor(R-Work) 0.2462
    R-Factor(R-Free) 0.2537
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1117
    Shell Resolution(Low) 4.3691
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 3383
    R-Factor(R-Work) 0.2288
    R-Factor(R-Free) 0.258
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3691
    Shell Resolution(Low) 4.7061
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 3429
    R-Factor(R-Work) 0.2166
    R-Factor(R-Free) 0.2373
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.7061
    Shell Resolution(Low) 5.179
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 3387
    R-Factor(R-Work) 0.202
    R-Factor(R-Free) 0.2438
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.179
    Shell Resolution(Low) 5.9267
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 3447
    R-Factor(R-Work) 0.2197
    R-Factor(R-Free) 0.2619
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.9267
    Shell Resolution(Low) 7.4608
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 3434
    R-Factor(R-Work) 0.2155
    R-Factor(R-Free) 0.2257
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.4608
    Shell Resolution(Low) 43.205
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 3304
    R-Factor(R-Work) 0.1534
    R-Factor(R-Free) 0.1809
    Percent Reflections(Observed) 90.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 13.051
    f_plane_restr 0.004
    f_chiral_restr 0.057
    f_angle_d 0.867
    f_bond_d 0.004
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 16642
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection XDS
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    molecular replacement Phaser version: 2.3.0
    data reduction Xscale