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An Information Portal to 106082 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4HY0
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 7.6
    Temperature 293.0
    Details 18.5% PEG 4000, 0.08M Tris_base, 0.02M Tris Cl, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 58.34 α = 90
    b = 100.84 β = 90
    c = 184.58 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 95
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2010-02-19
     
    Diffraction Radiation
    Monochromator Single Si(220) crystal monochromator
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 5.0.3
    Wavelength List 0.975
    Site ALS
    Beamline 5.0.3
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.84
    Resolution(Low) 50
    Number Reflections(All) 25173
    Number Reflections(Observed) 24921
    Percent Possible(Observed) 99.0
    Redundancy 6.6
     
    High Resolution Shell Details
    Resolution(High) 2.84
    Resolution(Low) 2.9
    Percent Possible(All) 98.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.84
    Resolution(Low) 40.0
    Number of Reflections(Observed) 24921
    Number of Reflections(R-Free) 1331
    Percent Reflections(Observed) 98.96
    R-Factor(Observed) 0.21111
    R-Work 0.20841
    R-Free 0.26221
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 74.622
    Anisotropic B[1][1] 4.18
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.42
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -5.6
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.84
    Shell Resolution(Low) 2.913
    Number of Reflections(R-Free) 99
    Number of Reflections(R-Work) 1646
    R-Factor(R-Work) 0.284
    R-Factor(R-Free) 0.415
    Percent Reflections(Observed) 97.65
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.004
    r_chiral_restr 0.065
    r_dihedral_angle_4_deg 14.226
    r_dihedral_angle_3_deg 17.142
    r_dihedral_angle_2_deg 36.133
    r_dihedral_angle_1_deg 5.226
    r_angle_other_deg 0.821
    r_angle_refined_deg 1.138
    r_bond_other_d 0.001
    r_bond_refined_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6311
    Nucleic Acid Atoms 0
    Heterogen Atoms 358
    Solvent Atoms 33
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ALS-BOS
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building PHASER
    data collection ALS-BOS