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X-RAY DIFFRACTION
Materials and Methods page
4HXD
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.5
    Temperature 293.0
    Details 0.25 M LiSO4, 0.10 M Bis-Tris, 29% PEG 3350, 40% (v/v) 1,3-butanediol , pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 113.51 α = 90
    b = 39.99 β = 97.33
    c = 114.19 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type NOIR-1
    Collection Date 2012-04-04
     
    Diffraction Radiation
    Monochromator Si 111
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 4.2.2
    Wavelength List 1.00
    Site ALS
    Beamline 4.2.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.85
    Resolution(Low) 50
    Number Reflections(All) 12408
    Number Reflections(Observed) 11887
    Percent Possible(Observed) 95.8
    R Merge I(Observed) 0.058
    Redundancy 3.3
     
    High Resolution Shell Details
    Resolution(High) 2.85
    Resolution(Low) 2.9
    Percent Possible(All) 79.0
    R Merge I(Observed) 0.141
    Redundancy 2.9
    Number Unique Reflections(All) 486
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.85
    Resolution(Low) 50.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 12472
    Number of Reflections(Observed) 11868
    Number of Reflections(R-Free) 567
    Percent Reflections(Observed) 95.16
    R-Factor(Observed) 0.2136
    R-Work 0.2103
    R-Free 0.278
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 20.821
    Anisotropic B[1][1] 0.25
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.02
    Anisotropic B[2][2] -0.23
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.01
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.833
    Shell Resolution(Low) 2.906
    Number of Reflections(Observed) 621
    Number of Reflections(R-Free) 29
    Number of Reflections(R-Work) 621
    R-Factor(R-Work) 0.292
    R-Factor(R-Free) 0.392
    Percent Reflections(Observed) 75.23
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.004
    r_chiral_restr 0.08
    r_dihedral_angle_4_deg 14.77
    r_dihedral_angle_3_deg 19.125
    r_dihedral_angle_2_deg 36.718
    r_dihedral_angle_1_deg 5.675
    r_angle_refined_deg 1.154
    r_bond_refined_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3698
    Nucleic Acid Atoms 0
    Heterogen Atoms 23
    Solvent Atoms 46
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0117
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5
    molecular replacement Phaser version: 2.3.0
    data reduction HKL