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X-RAY DIFFRACTION
Materials and Methods page
4HVI
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 293.0
    Details 30% PEG3350, 0.1M MES, 0.2M MgCl, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 47.09 α = 90
    b = 75.74 β = 90
    c = 89.92 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 5.0.2
    Wavelength List 1.0000
    Site ALS
    Beamline 5.0.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.4
    Resolution(Low) 44.96
    Number Reflections(Observed) 11992
    Percent Possible(Observed) 96.0
    B(Isotropic) From Wilson Plot 56.3
    Redundancy 5.4
     
    High Resolution Shell Details
    Resolution(High) 2.4
    Resolution(Low) 2.46
    Percent Possible(All) 72.2
    Mean I Over Sigma(Observed) 2.3
    R-Sym I(Observed) 0.443
    Redundancy 4.0
    Number Unique Reflections(All) 688
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method FOURIER SYNTHESIS
    reflnsShellList 2.4
    Resolution(Low) 44.96
    Number of Reflections(Observed) 11992
    Number of Reflections(R-Free) 611
    Percent Reflections(Observed) 95.99
    R-Factor(Observed) 0.23835
    R-Work 0.23518
    R-Free 0.30333
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 54.495
    Anisotropic B[1][1] 3.48
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.65
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.83
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4
    Shell Resolution(Low) 2.462
    Number of Reflections(R-Free) 33
    Number of Reflections(R-Work) 654
    R-Factor(R-Work) 0.285
    R-Factor(R-Free) 0.319
    Percent Reflections(Observed) 72.24
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 2.941
    r_scbond_it 1.695
    r_mcangle_it 1.201
    r_mcbond_it 0.614
    r_gen_planes_refined 0.006
    r_chiral_restr 0.082
    r_dihedral_angle_4_deg 19.716
    r_dihedral_angle_3_deg 16.719
    r_dihedral_angle_2_deg 33.436
    r_dihedral_angle_1_deg 5.299
    r_angle_refined_deg 1.218
    r_bond_refined_d 0.01
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2199
    Nucleic Acid Atoms 0
    Heterogen Atoms 25
    Solvent Atoms 20
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution Refmac
    Structure Refinement REFMAC 5.5.0072
     
    Software
    refinement REFMAC version: 5.5.0072
    model building Refmac
    data collection ADSC version: Quantum