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X-RAY DIFFRACTION
Materials and Methods page
4HUV
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, hanging drop
    pH 8.5
    Temperature 298.0
    Details 0.1M Tris HCl, 0.2M LiSO4, 25-30% PEG 8000, pH 8.5, vapor diffusion, hanging drop, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 86.28 α = 90
    b = 153.62 β = 90
    c = 80.5 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type RIGAKU RAXIS
    Collection Date 2008-12-17
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.5
    Resolution(Low) 50
    Number Reflections(Observed) 37663
    Percent Possible(Observed) 95.0
    B(Isotropic) From Wilson Plot 53.24
    Redundancy 7.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.5
    Resolution(Low) 43.14
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 37663
    Number of Reflections(R-Free) 1878
    Percent Reflections(Observed) 99.65
    R-Factor(Observed) 0.2114
    R-Work 0.2097
    R-Free 0.2449
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 43.27
    Anisotropic B[1][1] 4.0069
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.1199
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.8869
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5
    Shell Resolution(Low) 2.57
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2740
    R-Factor(R-Work) 0.242
    R-Factor(R-Free) 0.2977
    Percent Reflections(Observed) 99.65
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_bond_d 0.01
    t_angle_deg 1.17
    t_omega_torsion 3.01
    t_other_torsion 21.37
     
    Coordinate Error
    Luzzati ESD(Observed) 0.36
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6292
    Nucleic Acid Atoms 0
    Heterogen Atoms 10
    Solvent Atoms 181
     
     
  •   Software and Computing Hide
    Computing
    Data Collection blue ice
    Data Reduction (intensity integration) XSCALE
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement BUSTER 2.10.0
     
    Software
    data extraction pdb_extract version: 3.11
    refinement BUSTER-TNT
    molecular replacement Phaser
    data reduction Xscale