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An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4HUU
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, hanging drop
    pH 8.5
    Temperature 298.0
    Details 0.1M Tris HCl, 0.2M LiSO4, 25-30% PEG 8000, pH 8.5, vapor diffusion, hanging drop, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 83.69 α = 90
    b = 72.27 β = 103.29
    c = 86.83 γ = 90
     
    Space Group
    Space Group Name:    P 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2008-10-02
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX1
    Wavelength List 0.956
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2
    Resolution(Low) 50
    Number Reflections(Observed) 68232
    Percent Possible(Observed) 94.4
    R Merge I(Observed) 0.103
    B(Isotropic) From Wilson Plot 25.74
    Redundancy 4.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.0
    Resolution(Low) 42.68
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 68232
    Number of Reflections(R-Free) 3452
    Percent Reflections(Observed) 99.91
    R-Factor(Observed) 0.1934
    R-Work 0.1914
    R-Free 0.2311
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 29.89
    Anisotropic B[1][1] -0.6234
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -1.0389
    Anisotropic B[2][2] -4.222
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 4.8454
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0
    Shell Resolution(Low) 2.05
    Number of Reflections(R-Free) 235
    Number of Reflections(R-Work) 4794
    R-Factor(R-Work) 0.2313
    R-Factor(R-Free) 0.247
    Percent Reflections(Observed) 99.91
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_bond_d 0.009
    t_angle_deg 1.06
    t_omega_torsion 3.4
    t_other_torsion 17.92
     
    Coordinate Error
    Luzzati ESD(Observed) 0.237
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6335
    Nucleic Acid Atoms 0
    Heterogen Atoms 8
    Solvent Atoms 848
     
     
  •   Software and Computing Hide
    Computing
    Data Collection blue ice
    Data Reduction (intensity integration) xds
    Structure Solution PHASER
    Structure Refinement BUSTER 2.10.0
     
    Software
    data extraction pdb_extract version: 3.11
    refinement BUSTER-TNT
    molecular replacement Phaser