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X-RAY DIFFRACTION
Materials and Methods page
4HUS
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 7.5
    Temperature 298.0
    Details 2 M ammonium sulphate, 0.1 M HEPES pH 7.5, 2% PEG 400, virginiamycin M1, VAPOR DIFFUSION, SITTING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 93.31 α = 90
    b = 184.74 β = 90
    c = 98.57 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Collection Date 2012-07-27
     
    Diffraction Radiation
    Monochromator C(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 21-ID-F
    Wavelength List 0.97872
    Site APS
    Beamline 21-ID-F
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -2.0
    Resolution(High) 2.3
    Resolution(Low) 30
    Number Reflections(Observed) 37898
    Percent Possible(Observed) 99.1
    Redundancy 6.0
     
    High Resolution Shell Details
    Resolution(High) 2.3
    Resolution(Low) 2.34
    Percent Possible(All) 100.0
    Mean I Over Sigma(Observed) 2.64
    R-Sym I(Observed) 0.576
    Redundancy 5.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.36
    Resolution(Low) 29.389
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 34991
    Number of Reflections(R-Free) 1751
    Percent Reflections(Observed) 98.83
    R-Factor(Observed) 0.1865
    R-Work 0.1842
    R-Free 0.2284
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.36
    Shell Resolution(Low) 2.4238
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2578
    R-Factor(R-Work) 0.2193
    R-Factor(R-Free) 0.2566
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4238
    Shell Resolution(Low) 2.4951
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2526
    R-Factor(R-Work) 0.2133
    R-Factor(R-Free) 0.2803
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4951
    Shell Resolution(Low) 2.5756
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2551
    R-Factor(R-Work) 0.2167
    R-Factor(R-Free) 0.3209
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5756
    Shell Resolution(Low) 2.6676
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2581
    R-Factor(R-Work) 0.1987
    R-Factor(R-Free) 0.2357
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6676
    Shell Resolution(Low) 2.7743
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2535
    R-Factor(R-Work) 0.1943
    R-Factor(R-Free) 0.2597
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7743
    Shell Resolution(Low) 2.9005
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2582
    R-Factor(R-Work) 0.206
    R-Factor(R-Free) 0.263
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9005
    Shell Resolution(Low) 3.0532
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2563
    R-Factor(R-Work) 0.1963
    R-Factor(R-Free) 0.2603
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0532
    Shell Resolution(Low) 3.2443
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2576
    R-Factor(R-Work) 0.2043
    R-Factor(R-Free) 0.2524
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2443
    Shell Resolution(Low) 3.4944
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2576
    R-Factor(R-Work) 0.1852
    R-Factor(R-Free) 0.2276
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4944
    Shell Resolution(Low) 3.8454
    Number of Reflections(R-Free) 118
    Number of Reflections(R-Work) 2245
    R-Factor(R-Work) 0.1975
    R-Factor(R-Free) 0.2746
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8454
    Shell Resolution(Low) 4.4002
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2564
    R-Factor(R-Work) 0.1425
    R-Factor(R-Free) 0.1595
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4002
    Shell Resolution(Low) 5.5378
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2631
    R-Factor(R-Work) 0.1464
    R-Factor(R-Free) 0.185
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.5378
    Shell Resolution(Low) 29.391
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2732
    R-Factor(R-Work) 0.1956
    R-Factor(R-Free) 0.2153
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.075
    f_dihedral_angle_d 15.664
    f_angle_d 1.238
    f_bond_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5094
    Nucleic Acid Atoms 0
    Heterogen Atoms 196
    Solvent Atoms 508
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-3000
    Data Reduction (intensity integration) HKL-3000
    Data Reduction (data scaling) HKL-3000
    Structure Solution PHENIX (phenix.phaser)
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8.1_1168)
    model building PHENIX version: (phenix.phaser)
    data collection HKL-3000