X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 8
Temperature 300.0
Details PEG, pH 8, VAPOR DIFFUSION, temperature 300K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 118.33 α = 90
b = 118.33 β = 90
c = 227.32 γ = 120
Symmetry
Space Group P 32 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 1 -- 2010-01-01
Diffraction Radiation
Monochromator Protocol
1.000 SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 23-ID-D 1 APS 23-ID-D

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.8 60 98.3 -- -- -- -- 20000 18316 3.0 3.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.81 20.0 -- 0.0 20000 17371 933 98.28 0.3 0.31387 0.31081 0.37553 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.81 3.905 -- 51 1036 0.531 0.524 -- 90.89
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 159.779
Anisotropic B[1][1] 6.25
Anisotropic B[1][2] 3.13
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 6.25
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -9.38
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_other 0.008
r_gen_planes_refined 0.011
r_chiral_restr 0.131
r_dihedral_angle_4_deg 19.025
r_dihedral_angle_3_deg 26.589
r_dihedral_angle_2_deg 35.234
r_dihedral_angle_1_deg 15.504
r_angle_other_deg 4.691
r_angle_refined_deg 2.341
r_bond_other_d 0.0
r_bond_refined_d 0.018
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4215
Nucleic Acid Atoms 0
Heterogen Atoms 1
Solvent Atoms 0

Software

Computing
Computing Package Purpose
HKL-2000 Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
SHARP Structure Solution
REFMAC 5.6.0117 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.6.0117 refinement
SHARP model building
HKL-2000 data collection