POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4HSR
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.5
    Temperature 291.0
    Details 10-20% PEG8000, 10 mM Tris-HCl, pH 8.0-8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 68.16 α = 90
    b = 77.02 β = 90
    c = 192.14 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2010-06-24
     
    Diffraction Radiation
    Diffraction Protocol MAD
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX2
    Wavelength List 0.95360
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.57
    Resolution(Low) 96.07
    Number Reflections(All) 55855
    Number Reflections(Observed) 55855
    Percent Possible(Observed) 96.9
    R Merge I(Observed) 0.254
    B(Isotropic) From Wilson Plot 22.12
    Redundancy 9.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MAD
    reflnsShellList 2.13
    Resolution(Low) 96.07
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 55855
    Number of Reflections(Observed) 52947
    Number of Reflections(R-Free) 2831
    Percent Reflections(Observed) 96.9
    R-Factor(All) 0.15397
    R-Factor(Observed) 0.15397
    R-Work 0.15166
    R-Free 0.19836
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 25.286
    Anisotropic B[1][1] -0.25
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.43
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.17
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.13
    Shell Resolution(Low) 2.184
    Number of Reflections(R-Free) 118
    Number of Reflections(R-Work) 2282
    R-Factor(R-Work) 0.212
    R-Factor(R-Free) 0.26
    Percent Reflections(Observed) 59.08
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.011
    r_chiral_restr 0.139
    r_dihedral_angle_4_deg 19.888
    r_dihedral_angle_3_deg 14.901
    r_dihedral_angle_2_deg 33.975
    r_dihedral_angle_1_deg 6.883
    r_angle_refined_deg 2.016
    r_bond_refined_d 0.019
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5757
    Nucleic Acid Atoms 0
    Heterogen Atoms 10
    Solvent Atoms 561
     
     
  •   Software and Computing Hide
    Computing
    Data Collection Blue Ice
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution SHELXS
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building SHELXS
    data collection Blue version: Ice