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X-RAY DIFFRACTION
Materials and Methods page
4HS9
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, hanging drop
    pH 5
    Temperature 298.0
    Details 1X MMT Buffer pH 5.0, 20% PEG1500, vapor diffusion, hanging drop, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 48.1 α = 90
    b = 54.85 β = 90
    c = 96.01 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2012-06-06
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-C
    Wavelength List 1.0
    Site APS
    Beamline 24-ID-C
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.8
    Resolution(Low) 90
    Number Reflections(Observed) 23372
    Percent Possible(Observed) 96.6
    R Merge I(Observed) 0.068
    Redundancy 5.9
     
    High Resolution Shell Details
    Resolution(High) 1.8
    Resolution(Low) 1.86
    Percent Possible(All) 97.0
    R Merge I(Observed) 0.299
    Redundancy 5.6
    Number Unique Reflections(All) 2300
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.8
    Resolution(Low) 47.63
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 23320
    Number of Reflections(R-Free) 1184
    Percent Reflections(Observed) 96.44
    R-Factor(Observed) 0.1726
    R-Work 0.1709
    R-Free 0.2052
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 31.831
    Anisotropic B[1][1] -0.08
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.24
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.16
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.801
    Shell Resolution(Low) 1.848
    Number of Reflections(R-Free) 79
    Number of Reflections(R-Work) 1593
    R-Factor(R-Work) 0.261
    R-Factor(R-Free) 0.315
    Percent Reflections(Observed) 94.36
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.011
    r_chiral_restr 0.123
    r_dihedral_angle_4_deg 12.591
    r_dihedral_angle_3_deg 14.603
    r_dihedral_angle_2_deg 35.103
    r_dihedral_angle_1_deg 6.162
    r_angle_other_deg 0.958
    r_angle_refined_deg 1.976
    r_bond_other_d 0.001
    r_bond_refined_d 0.019
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2237
    Nucleic Acid Atoms 0
    Heterogen Atoms 48
    Solvent Atoms 117
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CrystalClear
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution PHASER
    Structure Refinement REFMAC 5.7.0029
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5
    molecular replacement Phaser version: 2.3.0
    data reduction SCALEPACK