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X-RAY DIFFRACTION
Materials and Methods page
4HP9
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, sitting drop
    Temperature 298.0
    Details 30% PEG-MME2000, 0.1M potasiumm thiocyanate, 1.0% benzamidine-HCl, vapor diffusion, sitting drop, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 89.53 α = 90
    b = 89.53 β = 90
    c = 89.53 γ = 90
     
    Space Group
    Space Group Name:    P 42 3 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARCCD
    Collection Date 2010-10-18
     
    Diffraction Radiation
    Diffraction Protocol single wavelength
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X06DA
    Wavelength List 1.00150
    Site SLS
    Beamline X06DA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.45
    Observed Criterion Sigma(I) 1.1
    Resolution(High) 2.12
    Resolution(Low) 89.53
    Number Reflections(All) 7429
    Number Reflections(Observed) 7429
    Percent Possible(Observed) 99.5
    Redundancy 9.9
     
    High Resolution Shell Details
    Resolution(High) 2.12
    Resolution(Low) 2.23
    Percent Possible(All) 97.1
    R Merge I(Observed) 0.691
    Mean I Over Sigma(Observed) 1.1
    R-Sym I(Observed) 0.691
    Redundancy 7.8
    Number Unique Reflections(All) 1020
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.12
    Resolution(Low) 44.764
    Cut-off Sigma(F) 1.46
    Number of Reflections(all) 13112
    Number of Reflections(Observed) 7403
    Number of Reflections(R-Free) 642
    Percent Reflections(Observed) 99.18
    R-Factor(Observed) 0.1959
    R-Work 0.1937
    R-Free 0.238
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 27.7094
    Anisotropic B[1][1] 0.0
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.12
    Shell Resolution(Low) 2.2826
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2425
    R-Factor(R-Work) 0.3144
    R-Factor(R-Free) 0.3859
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2826
    Shell Resolution(Low) 2.5123
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2502
    R-Factor(R-Work) 0.2161
    R-Factor(R-Free) 0.2613
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5123
    Shell Resolution(Low) 2.8758
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2516
    R-Factor(R-Work) 0.1978
    R-Factor(R-Free) 0.2645
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8758
    Shell Resolution(Low) 3.623
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2510
    R-Factor(R-Work) 0.1848
    R-Factor(R-Free) 0.2256
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.623
    Shell Resolution(Low) 44.774
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2517
    R-Factor(R-Work) 0.1593
    R-Factor(R-Free) 0.1831
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 14.345
    f_plane_restr 0.003
    f_chiral_restr 0.064
    f_angle_d 1.033
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 914
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 89
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.6.4_486)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    molecular replacement Phaser
    data reduction SCALA version: 3.3.9
    data collection Mosflm