POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4HOT
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 295.15
    Details -, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295.15K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 54.63 α = 90
    b = 85.19 β = 106.34
    c = 60.65 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 105
     
    Diffraction Detector
    Detector CCD
    Type RIGAKU SATURN 944+
    Collection Date 2012-07-15
     
    Diffraction Radiation
    Monochromator Varimax HF
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU MICROMAX-007 HF
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 1.7
    Resolution(High) 2.5
    Resolution(Low) 50
    Number Reflections(All) 18505
    Number Reflections(Observed) 18505
    Percent Possible(Observed) 97.9
     
    High Resolution Shell Details
    Resolution(High) 2.5
    Resolution(Low) 2.59
    Percent Possible(All) 82.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.501
    Resolution(Low) 34.431
    Cut-off Sigma(F) 1.0
    Number of Reflections(all) 17535
    Number of Reflections(Observed) 16270
    Number of Reflections(R-Free) 1265
    Percent Reflections(Observed) 87.84
    R-Factor(Observed) 0.1845
    R-Work 0.1804
    R-Free 0.2305
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5011
    Shell Resolution(Low) 2.6012
    Number of Reflections(R-Free) 100
    Number of Reflections(R-Work) 1216
    R-Factor(R-Work) 0.2463
    R-Factor(R-Free) 0.3288
    Percent Reflections(Observed) 64.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6012
    Shell Resolution(Low) 2.7196
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 1476
    R-Factor(R-Work) 0.2586
    R-Factor(R-Free) 0.3188
    Percent Reflections(Observed) 79.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7196
    Shell Resolution(Low) 2.8629
    Number of Reflections(R-Free) 115
    Number of Reflections(R-Work) 1615
    R-Factor(R-Work) 0.2477
    R-Factor(R-Free) 0.3121
    Percent Reflections(Observed) 84.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8629
    Shell Resolution(Low) 3.0422
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 1619
    R-Factor(R-Work) 0.2443
    R-Factor(R-Free) 0.2897
    Percent Reflections(Observed) 85.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0422
    Shell Resolution(Low) 3.2769
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 1687
    R-Factor(R-Work) 0.2405
    R-Factor(R-Free) 0.3281
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2769
    Shell Resolution(Low) 3.6063
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 1801
    R-Factor(R-Work) 0.2041
    R-Factor(R-Free) 0.2365
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6063
    Shell Resolution(Low) 4.1274
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 1815
    R-Factor(R-Work) 0.1587
    R-Factor(R-Free) 0.2162
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1274
    Shell Resolution(Low) 5.1972
    Number of Reflections(R-Free) 168
    Number of Reflections(R-Work) 1852
    R-Factor(R-Work) 0.1368
    R-Factor(R-Free) 0.1677
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.1972
    Shell Resolution(Low) 34.4338
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 1924
    R-Factor(R-Work) 0.1354
    R-Factor(R-Free) 0.1845
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.07
    f_dihedral_angle_d 15.608
    f_angle_d 1.017
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3887
    Nucleic Acid Atoms 97
    Heterogen Atoms 1
    Solvent Atoms 43
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8.1_1168)
    model building PHASER
    data collection HKL-2000