X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.5
Temperature 295.15
Details -, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295.15K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 54.63 α = 90
b = 85.19 β = 106.34
c = 60.65 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 105
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RIGAKU SATURN 944+ -- 2012-07-15
Diffraction Radiation
Monochromator Protocol
Varimax HF --
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.5 50 97.9 -- -- -- -- 18505 18505 0.0 1.7 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.5 2.59 82.2 -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.501 34.431 -- 1.0 17535 16270 1265 87.84 -- 0.1845 0.1804 0.2305 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.5011 2.6012 -- 100 1216 0.2463 0.3288 -- 64.0
X Ray Diffraction 2.6012 2.7196 -- 127 1476 0.2586 0.3188 -- 79.0
X Ray Diffraction 2.7196 2.8629 -- 115 1615 0.2477 0.3121 -- 84.0
X Ray Diffraction 2.8629 3.0422 -- 130 1619 0.2443 0.2897 -- 85.0
X Ray Diffraction 3.0422 3.2769 -- 160 1687 0.2405 0.3281 -- 90.0
X Ray Diffraction 3.2769 3.6063 -- 153 1801 0.2041 0.2365 -- 95.0
X Ray Diffraction 3.6063 4.1274 -- 155 1815 0.1587 0.2162 -- 97.0
X Ray Diffraction 4.1274 5.1972 -- 168 1852 0.1368 0.1677 -- 97.0
X Ray Diffraction 5.1972 34.4338 -- 157 1924 0.1354 0.1845 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.07
f_dihedral_angle_d 15.608
f_angle_d 1.017
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3887
Nucleic Acid Atoms 97
Heterogen Atoms 1
Solvent Atoms 43

Software

Computing
Computing Package Purpose
HKL-2000 Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (phenix.refine: 1.8.1_1168) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8.1_1168) refinement
PHASER model building
HKL-2000 data collection