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X-RAY DIFFRACTION
Materials and Methods page
4HOI
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, sitting drop
    pH 8.5
    Temperature 277.0
    Details 1.3M ammonium sulfate, 0.25M lithium sulfate, 0.1M Tris-HCl, pH 8.5, vapor diffusion, sitting drop, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 91.28 α = 90
    b = 91.28 β = 90
    c = 172.52 γ = 120
     
    Space Group
    Space Group Name:    P 32 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type ADSC QUANTUM 4
    Collection Date 2008-11-24
     
    Diffraction Radiation
    Diffraction Protocol single wavelength
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-2
    Wavelength List 0.933
    Site ESRF
    Beamline ID14-2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.1
    Observed Criterion Sigma(I) 1.3
    Resolution(High) 1.85
    Resolution(Low) 79.06
    Number Reflections(All) 71849
    Number Reflections(Observed) 71849
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.07
    Redundancy 7.8
     
    High Resolution Shell Details
    Resolution(High) 1.85
    Resolution(Low) 1.95
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.563
    Mean I Over Sigma(Observed) 1.3
    R-Sym I(Observed) 0.563
    Redundancy 5.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.85
    Resolution(Low) 40.34
    Cut-off Sigma(F) 1.36
    Number of Reflections(all) 71743
    Number of Reflections(Observed) 71734
    Number of Reflections(R-Free) 3629
    Percent Reflections(Observed) 99.97
    R-Factor(Observed) 0.1677
    R-Work 0.1664
    R-Free 0.1924
     
    Temperature Factor Modeling
    Mean Isotropic B Value 28.8497
    Anisotropic B[1][1] 0.34
    Anisotropic B[1][2] 0.17
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.34
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.51
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.85
    Shell Resolution(Low) 1.8743
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2591
    R-Factor(R-Work) 0.2428
    R-Factor(R-Free) 0.2387
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8743
    Shell Resolution(Low) 1.9
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2613
    R-Factor(R-Work) 0.219
    R-Factor(R-Free) 0.2366
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9
    Shell Resolution(Low) 1.9272
    Number of Reflections(R-Free) 98
    Number of Reflections(R-Work) 2587
    R-Factor(R-Work) 0.208
    R-Factor(R-Free) 0.2815
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9272
    Shell Resolution(Low) 1.9559
    Number of Reflections(R-Free) 117
    Number of Reflections(R-Work) 2597
    R-Factor(R-Work) 0.1985
    R-Factor(R-Free) 0.2205
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9559
    Shell Resolution(Low) 1.9865
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2626
    R-Factor(R-Work) 0.2038
    R-Factor(R-Free) 0.2368
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9865
    Shell Resolution(Low) 2.0191
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2590
    R-Factor(R-Work) 0.195
    R-Factor(R-Free) 0.2135
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0191
    Shell Resolution(Low) 2.0539
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2568
    R-Factor(R-Work) 0.1763
    R-Factor(R-Free) 0.2056
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0539
    Shell Resolution(Low) 2.0912
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2567
    R-Factor(R-Work) 0.1745
    R-Factor(R-Free) 0.2005
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0912
    Shell Resolution(Low) 2.1314
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2593
    R-Factor(R-Work) 0.1676
    R-Factor(R-Free) 0.1997
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1314
    Shell Resolution(Low) 2.1749
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2607
    R-Factor(R-Work) 0.1661
    R-Factor(R-Free) 0.2181
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1749
    Shell Resolution(Low) 2.2222
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2599
    R-Factor(R-Work) 0.1655
    R-Factor(R-Free) 0.208
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2222
    Shell Resolution(Low) 2.2739
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 2608
    R-Factor(R-Work) 0.162
    R-Factor(R-Free) 0.2227
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2739
    Shell Resolution(Low) 2.3308
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2576
    R-Factor(R-Work) 0.1589
    R-Factor(R-Free) 0.1898
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3308
    Shell Resolution(Low) 2.3938
    Number of Reflections(R-Free) 161
    Number of Reflections(R-Work) 2613
    R-Factor(R-Work) 0.1568
    R-Factor(R-Free) 0.1819
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3938
    Shell Resolution(Low) 2.4642
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2621
    R-Factor(R-Work) 0.1629
    R-Factor(R-Free) 0.1917
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4642
    Shell Resolution(Low) 2.5437
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2596
    R-Factor(R-Work) 0.1721
    R-Factor(R-Free) 0.2272
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5437
    Shell Resolution(Low) 2.6346
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2593
    R-Factor(R-Work) 0.1762
    R-Factor(R-Free) 0.1935
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6346
    Shell Resolution(Low) 2.7401
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 2586
    R-Factor(R-Work) 0.1765
    R-Factor(R-Free) 0.2134
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7401
    Shell Resolution(Low) 2.8648
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2630
    R-Factor(R-Work) 0.1806
    R-Factor(R-Free) 0.2084
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8648
    Shell Resolution(Low) 3.0158
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2608
    R-Factor(R-Work) 0.1821
    R-Factor(R-Free) 0.2005
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0158
    Shell Resolution(Low) 3.2047
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2654
    R-Factor(R-Work) 0.1777
    R-Factor(R-Free) 0.2071
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2047
    Shell Resolution(Low) 3.452
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2662
    R-Factor(R-Work) 0.1666
    R-Factor(R-Free) 0.1974
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.452
    Shell Resolution(Low) 3.7991
    Number of Reflections(R-Free) 163
    Number of Reflections(R-Work) 2628
    R-Factor(R-Work) 0.1487
    R-Factor(R-Free) 0.1758
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7991
    Shell Resolution(Low) 4.3483
    Number of Reflections(R-Free) 162
    Number of Reflections(R-Work) 2650
    R-Factor(R-Work) 0.1321
    R-Factor(R-Free) 0.163
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3483
    Shell Resolution(Low) 5.4762
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2702
    R-Factor(R-Work) 0.1237
    R-Factor(R-Free) 0.1465
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.4762
    Shell Resolution(Low) 40.3497
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2840
    R-Factor(R-Work) 0.2015
    R-Factor(R-Free) 0.1933
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.081
    f_dihedral_angle_d 13.036
    f_angle_d 1.214
    f_bond_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3675
    Nucleic Acid Atoms 0
    Heterogen Atoms 30
    Solvent Atoms 395
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5
    molecular replacement Phaser
    data reduction SCALA version: 3.2.25
    data collection Mosflm