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X-RAY DIFFRACTION
Materials and Methods page
4HLE
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, hanging drop
    pH 8.5
    Temperature 289.0
    Details PEG 3350, 0.2M NH4SO4, 0.1M Tris-HCl 8.5, vapor diffusion, hanging drop, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 144.38 α = 90
    b = 67.79 β = 95.44
    c = 106.76 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2009-01-28
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 5.0.1
    Wavelength List 1.0
    Site ALS
    Beamline 5.0.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.78
    Resolution(Low) 106.27
    Number Reflections(All) 26026
    Number Reflections(Observed) 26026
    Percent Possible(Observed) 99.7
    Redundancy 3.7
     
    High Resolution Shell Details
    Resolution(High) 2.78
    Resolution(Low) 2.93
    Percent Possible(All) 99.8
    R Merge I(Observed) 0.416
    Mean I Over Sigma(Observed) 1.9
    R-Sym I(Observed) 0.416
    Redundancy 3.7
    Number Unique Reflections(All) 3773
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.78
    Resolution(Low) 61.31
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 26024
    Number of Reflections(R-Free) 1314
    Percent Reflections(Observed) 99.56
    R-Factor(Observed) 0.2545
    R-Work 0.2535
    R-Free 0.2735
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 85.9458
    Anisotropic B[1][1] -2.6152
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -1.4004
    Anisotropic B[2][2] 2.1954
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.4199
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.78
    Shell Resolution(Low) 2.89
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2768
    R-Factor(R-Work) 0.2668
    R-Factor(R-Free) 0.289
    Percent Reflections(Observed) 99.56
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_other_torsion 18.98
    t_omega_torsion 1.88
    t_angle_deg 0.97
    t_bond_d 0.008
     
    Coordinate Error
    Luzzati ESD(Observed) 0.545
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6712
    Nucleic Acid Atoms 0
    Heterogen Atoms 25
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) XSCALE
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement BUSTER 2.11.2
     
    Software
    data extraction pdb_extract version: 3.11
    refinement BUSTER-TNT
    molecular replacement Phaser
    data reduction SCALA version: 3.3.20