POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
4HL7
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 298.0
    Details 25% PEG 3350, 0.2 M lithium sulfate, 0.1 M Tris HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 83.42 α = 90
    b = 147.64 β = 90
    c = 74.77 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 6M
    Collection Date 2011-12-19
     
    Diffraction Radiation
    Monochromator Si 111
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 17-ID
    Wavelength List 1.0
    Site APS
    Beamline 17-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.8
    Resolution(Low) 50
    Number Reflections(All) 86242
    Number Reflections(Observed) 86142
    Percent Possible(Observed) 99.9
     
    High Resolution Shell Details
    Resolution(High) 1.8
    Resolution(Low) 1.9
    Percent Possible(All) 100.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.8
    Resolution(Low) 44.45
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 82138
    Number of Reflections(Observed) 78099
    Number of Reflections(R-Free) 3896
    Percent Reflections(Observed) 95.08
    R-Factor(Observed) 0.16318
    R-Work 0.1613
    R-Free 0.20056
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 25.871
    Anisotropic B[1][1] 0.0
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8
    Shell Resolution(Low) 1.847
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 4990
    R-Factor(R-Work) 0.221
    R-Factor(R-Free) 0.224
    Percent Reflections(Observed) 85.6
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.011
    r_chiral_restr 0.121
    r_dihedral_angle_4_deg 19.72
    r_dihedral_angle_3_deg 13.81
    r_dihedral_angle_2_deg 34.599
    r_dihedral_angle_1_deg 6.13
    r_angle_refined_deg 1.646
    r_bond_refined_d 0.019
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6764
    Nucleic Acid Atoms 0
    Heterogen Atoms 15
    Solvent Atoms 751
     
     
  •   Software and Computing Hide
    Computing
    Data Collection JDirector
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution Phaser
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building Phaser
    data collection JDirector