X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 5.5
Temperature 289.0
Details 0.2 M ammonium sulfate, 0.1 M Bis-Tris pH 5.5, 25 % PEG 3350, 5 mM CdCl2,10 mM faropenum, temperature 289K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 145.63 α = 90
b = 39.32 β = 99.96
c = 75.37 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r mirrors 2012-08-08
Diffraction Radiation
Monochromator Protocol
double crystal monochromator SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.97934 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 50 99.5 -- 0.103 -- 3.5 28649 28649 0.0 0.0 32.08
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.0 2.03 100.0 -- 0.629 2.3 3.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.004 37.117 -- 1.33 28604 28604 1446 99.49 -- 0.2066 0.2041 0.2512 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0035 2.0751 -- 143 2673 0.2832 0.3626 -- 98.0
X Ray Diffraction 2.0751 2.1582 -- 119 2676 0.2564 0.3006 -- 99.0
X Ray Diffraction 2.1582 2.2564 -- 140 2687 0.23 0.3165 -- 100.0
X Ray Diffraction 2.2564 2.3754 -- 144 2706 0.227 0.2959 -- 100.0
X Ray Diffraction 2.3754 2.5242 -- 133 2711 0.2225 0.2523 -- 100.0
X Ray Diffraction 2.5242 2.719 -- 138 2723 0.2171 0.2371 -- 100.0
X Ray Diffraction 2.719 2.9925 -- 165 2709 0.2077 0.2454 -- 100.0
X Ray Diffraction 2.9925 3.4253 -- 146 2725 0.2061 0.25 -- 100.0
X Ray Diffraction 3.4253 4.3145 -- 156 2742 0.1786 0.2438 -- 100.0
X Ray Diffraction 4.3145 37.1235 -- 162 2806 0.1857 0.2245 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model mixed
Mean Isotropic B 44.9
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_chiral_restr 0.528
f_dihedral_angle_d 16.111
f_angle_d 1.739
f_bond_d 0.009
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3487
Nucleic Acid Atoms 0
Heterogen Atoms 77
Solvent Atoms 136

Software

Computing
Computing Package Purpose
SBCCOLLECT, HKL3000 Data Collection
HKL-3000 Data Reduction (intensity integration)
HKL-3000 Data Reduction (data scaling)
HKL3000, Molrep Structure Solution
PHENIX (phenix.refine: 1.8.1_1161) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8.1_1161) refinement
Molrep model building
HKL3000 model building
HKL3000 data collection
SBCCOLLECT data collection