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X-RAY DIFFRACTION
Materials and Methods page
4HJA
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 290.0
    Details 25% PEG 8000, 0.2M ammonium formate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 290K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 45.85 α = 90
    b = 56.78 β = 90
    c = 66.26 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type RIGAKU RAXIS IV++
    Collection Date 2011-12-09
     
    Diffraction Radiation
    Monochromator osmic mirrors
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RUH2R
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) -3.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2
    Resolution(Low) 50
    Number Reflections(All) 12272
    Number Reflections(Observed) 12182
    Percent Possible(Observed) 99.3
    R Merge I(Observed) 0.081
    Redundancy 3.4
     
    High Resolution Shell Details
    Resolution(High) 2.0
    Resolution(Low) 2.07
    Percent Possible(All) 93.4
    R Merge I(Observed) 0.463
    Redundancy 3.1
    Number Unique Reflections(All) 1123
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.1
    Resolution(Low) 31.408
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 10557
    Number of Reflections(Observed) 10368
    Number of Reflections(R-Free) 1043
    Percent Reflections(Observed) 98.19
    R-Factor(All) 0.1983
    R-Factor(Observed) 0.1983
    R-Work 0.1926
    R-Free 0.2479
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 27.7296
    Anisotropic B[1][1] 0.5949
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.4791
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.074
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1
    Shell Resolution(Low) 2.2108
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1241
    R-Factor(R-Work) 0.2163
    R-Factor(R-Free) 0.2928
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2108
    Shell Resolution(Low) 2.3492
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 1296
    R-Factor(R-Work) 0.2092
    R-Factor(R-Free) 0.2872
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3492
    Shell Resolution(Low) 2.5306
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1302
    R-Factor(R-Work) 0.1976
    R-Factor(R-Free) 0.2868
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5306
    Shell Resolution(Low) 2.7851
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 1324
    R-Factor(R-Work) 0.1916
    R-Factor(R-Free) 0.3056
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7851
    Shell Resolution(Low) 3.1877
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 1346
    R-Factor(R-Work) 0.197
    R-Factor(R-Free) 0.2492
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1877
    Shell Resolution(Low) 4.0149
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 1370
    R-Factor(R-Work) 0.1724
    R-Factor(R-Free) 0.2279
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0149
    Shell Resolution(Low) 31.412
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 1446
    R-Factor(R-Work) 0.1972
    R-Factor(R-Free) 0.2137
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 19.622
    f_plane_restr 0.004
    f_chiral_restr 0.084
    f_angle_d 1.225
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1177
    Nucleic Acid Atoms 225
    Heterogen Atoms 0
    Solvent Atoms 138
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX (phenix.refine: 1.7_650)
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction HKL