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X-RAY DIFFRACTION
Materials and Methods page
4HJ8
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 290.0
    Details 35% PEG 8000, 0.2M sodium formate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 290K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 44.58 α = 90
    b = 57.55 β = 90
    c = 66.57 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type RIGAKU RAXIS IV++
    Collection Date 2012-03-05
     
    Diffraction Radiation
    Monochromator osmic mirrors
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RUH2R
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) -3.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.04
    Resolution(Low) 50
    Number Reflections(All) 11338
    Number Reflections(Observed) 11273
    Percent Possible(Observed) 99.5
    R Merge I(Observed) 0.073
    Redundancy 3.4
     
    High Resolution Shell Details
    Resolution(High) 2.05
    Resolution(Low) 2.12
    Percent Possible(All) 98.9
    R Merge I(Observed) 0.459
    Redundancy 3.2
    Number Unique Reflections(All) 1093
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.043
    Resolution(Low) 18.779
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 11245
    Number of Reflections(Observed) 10956
    Number of Reflections(R-Free) 1103
    Percent Reflections(Observed) 96.64
    R-Factor(All) 0.1962
    R-Factor(Observed) 0.1962
    R-Work 0.1923
    R-Free 0.23
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 30.0413
    Anisotropic B[1][1] 8.8786
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -2.7538
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -6.1248
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0427
    Shell Resolution(Low) 2.1356
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 1093
    R-Factor(R-Work) 0.257
    R-Factor(R-Free) 0.321
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1356
    Shell Resolution(Low) 2.248
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 1176
    R-Factor(R-Work) 0.2306
    R-Factor(R-Free) 0.2983
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.248
    Shell Resolution(Low) 2.3886
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 1220
    R-Factor(R-Work) 0.2231
    R-Factor(R-Free) 0.2756
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3886
    Shell Resolution(Low) 2.5726
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 1216
    R-Factor(R-Work) 0.2161
    R-Factor(R-Free) 0.2527
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5726
    Shell Resolution(Low) 2.8307
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 1234
    R-Factor(R-Work) 0.1971
    R-Factor(R-Free) 0.2139
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8307
    Shell Resolution(Low) 3.2385
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1275
    R-Factor(R-Work) 0.1877
    R-Factor(R-Free) 0.2517
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2385
    Shell Resolution(Low) 4.0733
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1286
    R-Factor(R-Work) 0.1691
    R-Factor(R-Free) 0.2054
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0733
    Shell Resolution(Low) 18.7799
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 1353
    R-Factor(R-Work) 0.1784
    R-Factor(R-Free) 0.1991
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 17.849
    f_plane_restr 0.006
    f_chiral_restr 0.071
    f_angle_d 1.046
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1169
    Nucleic Acid Atoms 182
    Heterogen Atoms 0
    Solvent Atoms 125
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX (phenix.refine: 1.7_650)
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction HKL