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X-RAY DIFFRACTION
Materials and Methods page
4HJ6
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 290.0
    Details 0.1 M HEPES, 4.3 M NaCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 108.13 α = 90
    b = 108.13 β = 90
    c = 84.63 γ = 120
     
    Space Group
    Space Group Name:    P 65
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Collection Date 2011-10-19
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type CHESS BEAMLINE A1
    Site CHESS
    Beamline A1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.2
    Resolution(Low) 50
    Number Reflections(Observed) 28665
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.079
    Redundancy 11.3
     
    High Resolution Shell Details
    Resolution(High) 2.2
    Resolution(Low) 2.24
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.585
    Redundancy 10.5
    Number Unique Reflections(All) 1434
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.2
    Resolution(Low) 31.216
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 28549
    Number of Reflections(R-Free) 2006
    Percent Reflections(Observed) 99.7
    R-Factor(Observed) 0.2079
    R-Work 0.2065
    R-Free 0.2256
     
    Temperature Factor Modeling
    Mean Isotropic B Value 63.3684
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2
    Shell Resolution(Low) 2.255
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1905
    R-Factor(R-Work) 0.2701
    R-Factor(R-Free) 0.295
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.255
    Shell Resolution(Low) 2.316
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 1851
    R-Factor(R-Work) 0.2703
    R-Factor(R-Free) 0.2883
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.316
    Shell Resolution(Low) 2.3841
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1883
    R-Factor(R-Work) 0.2703
    R-Factor(R-Free) 0.3053
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3841
    Shell Resolution(Low) 2.461
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 1887
    R-Factor(R-Work) 0.2655
    R-Factor(R-Free) 0.3069
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.461
    Shell Resolution(Low) 2.5489
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1890
    R-Factor(R-Work) 0.2607
    R-Factor(R-Free) 0.3159
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5489
    Shell Resolution(Low) 2.6509
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 1903
    R-Factor(R-Work) 0.273
    R-Factor(R-Free) 0.3116
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6509
    Shell Resolution(Low) 2.7715
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1889
    R-Factor(R-Work) 0.2652
    R-Factor(R-Free) 0.2787
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7715
    Shell Resolution(Low) 2.9175
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 1889
    R-Factor(R-Work) 0.2531
    R-Factor(R-Free) 0.277
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9175
    Shell Resolution(Low) 3.1002
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1898
    R-Factor(R-Work) 0.2599
    R-Factor(R-Free) 0.272
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1002
    Shell Resolution(Low) 3.3393
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 1887
    R-Factor(R-Work) 0.2361
    R-Factor(R-Free) 0.2691
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3393
    Shell Resolution(Low) 3.6749
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1897
    R-Factor(R-Work) 0.202
    R-Factor(R-Free) 0.206
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6749
    Shell Resolution(Low) 4.2055
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 1916
    R-Factor(R-Work) 0.1746
    R-Factor(R-Free) 0.1932
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2055
    Shell Resolution(Low) 5.2943
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 1909
    R-Factor(R-Work) 0.1534
    R-Factor(R-Free) 0.1584
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.2943
    Shell Resolution(Low) 31.2187
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 1939
    R-Factor(R-Work) 0.1767
    R-Factor(R-Free) 0.2087
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 18.676
    f_plane_restr 0.005
    f_chiral_restr 0.074
    f_angle_d 1.161
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2745
    Nucleic Acid Atoms 0
    Heterogen Atoms 62
    Solvent Atoms 60
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (data scaling) HKL
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction HKL