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X-RAY DIFFRACTION
Materials and Methods page
4HJ5
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 290.0
    Details 35% PEG 6000, 0.2M sodium formate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 290K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 40.87 α = 90
    b = 59.24 β = 90
    c = 65.76 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type RIGAKU RAXIS IV++
    Collection Date 2012-02-07
     
    Diffraction Radiation
    Monochromator osmic mirrors
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RUH2R
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) -3.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.04
    Resolution(Low) 50
    Number Reflections(All) 10598
    Number Reflections(Observed) 9855
    Percent Possible(Observed) 93.0
    R Merge I(Observed) 0.077
    Redundancy 2.4
     
    High Resolution Shell Details
    Resolution(High) 2.05
    Resolution(Low) 2.12
    Percent Possible(All) 95.0
    R Merge I(Observed) 0.411
    Redundancy 2.5
    Number Unique Reflections(All) 978
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.04
    Resolution(Low) 29.951
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 9833
    Number of Reflections(Observed) 9514
    Number of Reflections(R-Free) 951
    Percent Reflections(Observed) 89.38
    R-Factor(All) 0.2295
    R-Factor(Observed) 0.2295
    R-Work 0.226
    R-Free 0.2609
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 38.5819
    Anisotropic B[1][1] 5.9957
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.4473
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -5.2647
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0397
    Shell Resolution(Low) 2.1472
    Number of Reflections(R-Free) 121
    Number of Reflections(R-Work) 1082
    R-Factor(R-Work) 0.3077
    R-Factor(R-Free) 0.3506
    Percent Reflections(Observed) 81.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1472
    Shell Resolution(Low) 2.2817
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 1207
    R-Factor(R-Work) 0.2821
    R-Factor(R-Free) 0.2967
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2817
    Shell Resolution(Low) 2.4578
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1217
    R-Factor(R-Work) 0.2492
    R-Factor(R-Free) 0.3241
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4578
    Shell Resolution(Low) 2.705
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1251
    R-Factor(R-Work) 0.2584
    R-Factor(R-Free) 0.3031
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.705
    Shell Resolution(Low) 3.0961
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1264
    R-Factor(R-Work) 0.243
    R-Factor(R-Free) 0.2999
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0961
    Shell Resolution(Low) 3.8994
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 1245
    R-Factor(R-Work) 0.2024
    R-Factor(R-Free) 0.2562
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8994
    Shell Resolution(Low) 29.9545
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 1297
    R-Factor(R-Work) 0.2018
    R-Factor(R-Free) 0.2109
    Percent Reflections(Observed) 89.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 16.845
    f_plane_restr 0.004
    f_chiral_restr 0.076
    f_angle_d 1.097
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1164
    Nucleic Acid Atoms 184
    Heterogen Atoms 0
    Solvent Atoms 93
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX (phenix.refine: 1.7_650)
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction HKL