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X-RAY DIFFRACTION
Materials and Methods page
4HJ4
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.5
    Temperature 290.0
    Details 30% PEG400, 0.15 M MgCl2, 0.1 M HEPES, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 65.8 α = 90
    b = 70.5 β = 90
    c = 74.4 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Collection Date 2010-11-11
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type CHESS BEAMLINE A1
    Wavelength List 0.978
    Site CHESS
    Beamline A1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.7
    Resolution(Low) 30
    Number Reflections(Observed) 9927
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.107
    Redundancy 6.9
     
    High Resolution Shell Details
    Resolution(High) 2.7
    Resolution(Low) 2.75
    Percent Possible(All) 99.2
    R Merge I(Observed) 0.366
    Redundancy 5.8
    Number Unique Reflections(All) 478
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.703
    Resolution(Low) 29.813
    Cut-off Sigma(F) 1.36
    Number of Reflections(Observed) 9886
    Number of Reflections(R-Free) 1025
    Percent Reflections(Observed) 99.79
    R-Factor(Observed) 0.1997
    R-Work 0.1935
    R-Free 0.2516
     
    Temperature Factor Modeling
    Mean Isotropic B Value 66.1312
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.703
    Shell Resolution(Low) 2.8454
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 1246
    R-Factor(R-Work) 0.1892
    R-Factor(R-Free) 0.2851
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8454
    Shell Resolution(Low) 3.0236
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1241
    R-Factor(R-Work) 0.1896
    R-Factor(R-Free) 0.2554
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0236
    Shell Resolution(Low) 3.2567
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 1255
    R-Factor(R-Work) 0.1816
    R-Factor(R-Free) 0.2453
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2567
    Shell Resolution(Low) 3.584
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 1247
    R-Factor(R-Work) 0.1697
    R-Factor(R-Free) 0.2353
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.584
    Shell Resolution(Low) 4.1015
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 1256
    R-Factor(R-Work) 0.1642
    R-Factor(R-Free) 0.2207
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1015
    Shell Resolution(Low) 5.163
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 1280
    R-Factor(R-Work) 0.1931
    R-Factor(R-Free) 0.2497
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.163
    Shell Resolution(Low) 29.8152
    Number of Reflections(R-Free) 172
    Number of Reflections(R-Work) 1336
    R-Factor(R-Work) 0.23
    R-Factor(R-Free) 0.2768
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 18.343
    f_plane_restr 0.006
    f_chiral_restr 0.075
    f_angle_d 1.234
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2727
    Nucleic Acid Atoms 0
    Heterogen Atoms 62
    Solvent Atoms 12
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (data scaling) HKL
    Structure Refinement PHENIX (phenix.refine: 1.8_1069)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction HKL