X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 99 α = 90
b = 93.53 β = 93.91
c = 51.18 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU FR-D -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.1 50 87.2 0.05 -- -- 2.2 -- 23814 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.1 2.18 84.9 0.229 -- -- 2.0 2334

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.1 34.49 -- 0.0 -- 23318 1838 85.6 -- -- 0.2147 0.258 --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 29.39
Anisotropic B[1][1] -2.502
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 4.722
Anisotropic B[2][2] 4.629
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.127
RMS Deviations
Key Refinement Restraint Deviation
c_angle_d 1.346
c_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3490
Nucleic Acid Atoms 0
Heterogen Atoms 76
Solvent Atoms 298

Software

Computing
Computing Package Purpose
SCALEPACK Data Reduction (data scaling)
CNS Structure Refinement
Software
Software Name Purpose
pdb_extract version: 3.11 data extraction
CNS refinement
SCALEPACK data reduction