X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.2
Temperature 289.0
Details 18% PEG 5000 MME, 0.1 M MES, O.1 M Ammonium sulfate, 5% glycerol, 1.8 mM UDM, pH 6.2, vapor diffusion, hanging drop, temperature 289K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 128.68 α = 90
b = 56.37 β = 96.55
c = 140.19 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL PSI PILATUS 6M -- 2012-07-18
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-C 0.9795 APS 24-ID-C

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 139.27 97.4 0.072 -- -- -- 158163 154051 146309.0 -3.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 1.95 85.6 0.01 -- 1.4 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 1.9 29.76 -- -- 158163 146309 7722 97.33 -- 0.21606 0.21406 0.25464 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.949 -- 489 9480 0.339 0.379 -- 85.3
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 57.0
Anisotropic B[1][1] -1.74
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 1.92
Anisotropic B[2][2] 0.39
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.1
RMS Deviations
Key Refinement Restraint Deviation
r_bond_refined_d 0.009
r_dihedral_angle_2_deg 34.788
r_chiral_restr 0.14
r_dihedral_angle_3_deg 15.624
r_gen_planes_refined 0.005
r_dihedral_angle_4_deg 17.151
r_dihedral_angle_1_deg 6.301
r_angle_refined_deg 1.508
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 13047
Nucleic Acid Atoms 0
Heterogen Atoms 357
Solvent Atoms 937

Software

Software
Software Name Purpose
XSCALE data scaling
SOLVE phasing
RESOLVE phasing
REFMAC refinement version: 5.6.0117
PDB_EXTRACT data extraction version: 3.11
ADSC data collection
XDC data reduction