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X-RAY DIFFRACTION
Materials and Methods page
4HJ1
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, hanging drop
    pH 6.2
    Temperature 289.0
    Details 18% PEG 5000 MME, 0.1 M MES, O.1 M Ammonium sulfate, 5% glycerol, 1.8 mM UDM, pH 6.2, vapor diffusion, hanging drop, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 128.68 α = 90
    b = 56.37 β = 96.55
    c = 140.19 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type PSI PILATUS 6M
    Collection Date 2012-07-18
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-C
    Wavelength List 0.9795
    Site APS
    Beamline 24-ID-C
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 146309.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.9
    Resolution(Low) 139.27
    Number Reflections(All) 158163
    Number Reflections(Observed) 154051
    Percent Possible(Observed) 97.4
    R Merge I(Observed) 0.072
     
    High Resolution Shell Details
    Resolution(High) 1.9
    Resolution(Low) 1.95
    Percent Possible(All) 85.6
    R Merge I(Observed) 0.01
    Mean I Over Sigma(Observed) 1.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 1.9
    Resolution(Low) 29.76
    Number of Reflections(all) 158163
    Number of Reflections(Observed) 146309
    Number of Reflections(R-Free) 7722
    Percent Reflections(Observed) 97.33
    R-Factor(Observed) 0.21606
    R-Work 0.21406
    R-Free 0.25464
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 57.0
    Anisotropic B[1][1] -1.74
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 1.92
    Anisotropic B[2][2] 0.39
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.1
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9
    Shell Resolution(Low) 1.949
    Number of Reflections(R-Free) 489
    Number of Reflections(R-Work) 9480
    R-Factor(R-Work) 0.339
    R-Factor(R-Free) 0.379
    Percent Reflections(Observed) 85.3
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.005
    r_chiral_restr 0.14
    r_dihedral_angle_4_deg 17.151
    r_dihedral_angle_3_deg 15.624
    r_dihedral_angle_2_deg 34.788
    r_dihedral_angle_1_deg 6.301
    r_angle_refined_deg 1.508
    r_bond_refined_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 13047
    Nucleic Acid Atoms 0
    Heterogen Atoms 357
    Solvent Atoms 937
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC
    Data Reduction (intensity integration) XDC
    Data Reduction (data scaling) XSCALE
    Structure Solution SOLVE
    Structure Refinement REFMAC 5.7.0029
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5 version: 5.6.0117
    density modification RESOLVE
    phasing SOLVE
    data reduction Xscale