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X-RAY DIFFRACTION
Materials and Methods page
4HIO
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 290.0
    Details 30% PEG 6000, 0.2M sodium formate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 290K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 41.34 α = 90
    b = 59.87 β = 90
    c = 66.28 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type RIGAKU RAXIS IV++
    Collection Date 2012-01-04
     
    Diffraction Radiation
    Monochromator osmic mirrors
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RUH2R
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) -3.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.75
    Resolution(Low) 50
    Number Reflections(All) 17039
    Number Reflections(Observed) 16782
    Percent Possible(Observed) 98.5
    R Merge I(Observed) 0.057
    Redundancy 3.3
     
    High Resolution Shell Details
    Resolution(High) 1.76
    Resolution(Low) 1.82
    Percent Possible(All) 95.7
    R Merge I(Observed) 0.366
    Redundancy 3.0
    Number Unique Reflections(All) 1610
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.753
    Resolution(Low) 30.264
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 16745
    Number of Reflections(Observed) 16430
    Number of Reflections(R-Free) 1641
    Percent Reflections(Observed) 96.13
    R-Factor(All) 0.2169
    R-Factor(Observed) 0.2169
    R-Work 0.2146
    R-Free 0.236
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 21.5903
    Anisotropic B[1][1] 1.4752
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -2.0784
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.0728
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7534
    Shell Resolution(Low) 1.805
    Number of Reflections(R-Free) 110
    Number of Reflections(R-Work) 1021
    R-Factor(R-Work) 0.3221
    R-Factor(R-Free) 0.3175
    Percent Reflections(Observed) 81.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.805
    Shell Resolution(Low) 1.8632
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 1181
    R-Factor(R-Work) 0.2692
    R-Factor(R-Free) 0.2708
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8632
    Shell Resolution(Low) 1.9298
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 1187
    R-Factor(R-Work) 0.2428
    R-Factor(R-Free) 0.2674
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9298
    Shell Resolution(Low) 2.0071
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1206
    R-Factor(R-Work) 0.2243
    R-Factor(R-Free) 0.2567
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0071
    Shell Resolution(Low) 2.0984
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1224
    R-Factor(R-Work) 0.2148
    R-Factor(R-Free) 0.2291
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0984
    Shell Resolution(Low) 2.209
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 1246
    R-Factor(R-Work) 0.2259
    R-Factor(R-Free) 0.2706
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.209
    Shell Resolution(Low) 2.3473
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 1245
    R-Factor(R-Work) 0.2219
    R-Factor(R-Free) 0.2483
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3473
    Shell Resolution(Low) 2.5285
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 1250
    R-Factor(R-Work) 0.2204
    R-Factor(R-Free) 0.2221
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5285
    Shell Resolution(Low) 2.7828
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1273
    R-Factor(R-Work) 0.222
    R-Factor(R-Free) 0.2474
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7828
    Shell Resolution(Low) 3.1851
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1293
    R-Factor(R-Work) 0.2264
    R-Factor(R-Free) 0.2182
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1851
    Shell Resolution(Low) 4.0114
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 1290
    R-Factor(R-Work) 0.1788
    R-Factor(R-Free) 0.2049
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0114
    Shell Resolution(Low) 30.2689
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 1373
    R-Factor(R-Work) 0.1981
    R-Factor(R-Free) 0.2347
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 18.754
    f_plane_restr 0.005
    f_chiral_restr 0.061
    f_angle_d 0.877
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1177
    Nucleic Acid Atoms 186
    Heterogen Atoms 0
    Solvent Atoms 192
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX (phenix.refine: 1.7_650)
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction HKL