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X-RAY DIFFRACTION
Materials and Methods page
4HIM
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 290.0
    Details 20% PEG 3000, 0.2M sodium formate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 290K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 45.02 α = 90
    b = 57.4 β = 90
    c = 66.4 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type RIGAKU RAXIS IV++
    Collection Date 2011-12-09
     
    Diffraction Radiation
    Monochromator osmic mirrors
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RUH2R
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) -3.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.75
    Resolution(Low) 50
    Number Reflections(All) 17995
    Number Reflections(Observed) 17770
    Percent Possible(Observed) 98.8
    R Merge I(Observed) 0.034
    Redundancy 3.0
     
    High Resolution Shell Details
    Resolution(High) 1.75
    Resolution(Low) 1.81
    Percent Possible(All) 98.9
    R Merge I(Observed) 0.147
    Redundancy 2.9
    Number Unique Reflections(All) 1727
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.75
    Resolution(Low) 31.255
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 17732
    Number of Reflections(Observed) 17626
    Number of Reflections(R-Free) 1761
    Percent Reflections(Observed) 98.24
    R-Factor(All) 0.2246
    R-Factor(Observed) 0.2246
    R-Work 0.2214
    R-Free 0.2516
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 26.979
    Anisotropic B[1][1] 7.0316
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -4.0875
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.9441
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7497
    Shell Resolution(Low) 1.797
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 1166
    R-Factor(R-Work) 0.3054
    R-Factor(R-Free) 0.3102
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.797
    Shell Resolution(Low) 1.8498
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 1184
    R-Factor(R-Work) 0.2779
    R-Factor(R-Free) 0.3252
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8498
    Shell Resolution(Low) 1.9095
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 1201
    R-Factor(R-Work) 0.2472
    R-Factor(R-Free) 0.2884
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9095
    Shell Resolution(Low) 1.9778
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 1194
    R-Factor(R-Work) 0.2308
    R-Factor(R-Free) 0.2784
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9778
    Shell Resolution(Low) 2.0569
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 1210
    R-Factor(R-Work) 0.2278
    R-Factor(R-Free) 0.2602
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0569
    Shell Resolution(Low) 2.1505
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 1206
    R-Factor(R-Work) 0.2363
    R-Factor(R-Free) 0.2873
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1505
    Shell Resolution(Low) 2.2639
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 1211
    R-Factor(R-Work) 0.255
    R-Factor(R-Free) 0.245
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2639
    Shell Resolution(Low) 2.4057
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 1231
    R-Factor(R-Work) 0.2399
    R-Factor(R-Free) 0.263
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4057
    Shell Resolution(Low) 2.5913
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1226
    R-Factor(R-Work) 0.2556
    R-Factor(R-Free) 0.2322
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5913
    Shell Resolution(Low) 2.852
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1220
    R-Factor(R-Work) 0.2309
    R-Factor(R-Free) 0.2786
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.852
    Shell Resolution(Low) 3.2643
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 1243
    R-Factor(R-Work) 0.2129
    R-Factor(R-Free) 0.2307
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2643
    Shell Resolution(Low) 4.1112
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1259
    R-Factor(R-Work) 0.1885
    R-Factor(R-Free) 0.2453
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1112
    Shell Resolution(Low) 31.2597
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 1314
    R-Factor(R-Work) 0.2004
    R-Factor(R-Free) 0.2273
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 18.539
    f_plane_restr 0.003
    f_chiral_restr 0.053
    f_angle_d 0.813
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1169
    Nucleic Acid Atoms 186
    Heterogen Atoms 0
    Solvent Atoms 172
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX (phenix.refine: 1.7_650)
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction HKL