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X-RAY DIFFRACTION
Materials and Methods page
4HI4
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.5
    Temperature 290.0
    Details 5-20% PEG 4000, 0.2M sodium acetate, 0.1M Tris, pH 8.5-9.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 67.36 α = 90
    b = 67.43 β = 90
    c = 117.87 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 200
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2010-07-09
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type CHESS BEAMLINE A1
    Wavelength List 0.97720
    Site CHESS
    Beamline A1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.3
    Resolution(Low) 50
    Number Reflections(Observed) 24384
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.074
    Redundancy 6.5
     
    High Resolution Shell Details
    Resolution(High) 2.3
    Resolution(Low) 2.34
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.32
    Redundancy 6.6
    Number Unique Reflections(All) 1175
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.304
    Resolution(Low) 44.376
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 24313
    Number of Reflections(R-Free) 1985
    Percent Reflections(Observed) 99.58
    R-Factor(Observed) 0.2297
    R-Work 0.2281
    R-Free 0.2479
     
    Temperature Factor Modeling
    Mean Isotropic B Value 22.8216
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3037
    Shell Resolution(Low) 2.3613
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 1497
    R-Factor(R-Work) 0.2256
    R-Factor(R-Free) 0.2823
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3613
    Shell Resolution(Low) 2.4251
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1582
    R-Factor(R-Work) 0.236
    R-Factor(R-Free) 0.306
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4251
    Shell Resolution(Low) 2.4965
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 1584
    R-Factor(R-Work) 0.2339
    R-Factor(R-Free) 0.3067
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4965
    Shell Resolution(Low) 2.5771
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 1559
    R-Factor(R-Work) 0.2388
    R-Factor(R-Free) 0.2514
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5771
    Shell Resolution(Low) 2.6692
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1596
    R-Factor(R-Work) 0.2439
    R-Factor(R-Free) 0.2818
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6692
    Shell Resolution(Low) 2.776
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 1554
    R-Factor(R-Work) 0.2501
    R-Factor(R-Free) 0.2526
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.776
    Shell Resolution(Low) 2.9023
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1599
    R-Factor(R-Work) 0.2534
    R-Factor(R-Free) 0.3707
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9023
    Shell Resolution(Low) 3.0553
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1574
    R-Factor(R-Work) 0.2568
    R-Factor(R-Free) 0.2606
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0553
    Shell Resolution(Low) 3.2467
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1600
    R-Factor(R-Work) 0.2484
    R-Factor(R-Free) 0.2478
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2467
    Shell Resolution(Low) 3.4973
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1602
    R-Factor(R-Work) 0.2156
    R-Factor(R-Free) 0.2849
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4973
    Shell Resolution(Low) 3.849
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1583
    R-Factor(R-Work) 0.2215
    R-Factor(R-Free) 0.2113
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.849
    Shell Resolution(Low) 4.4056
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 1622
    R-Factor(R-Work) 0.2049
    R-Factor(R-Free) 0.25
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4056
    Shell Resolution(Low) 5.5489
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 1650
    R-Factor(R-Work) 0.2094
    R-Factor(R-Free) 0.1869
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.5489
    Shell Resolution(Low) 44.3839
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 1726
    R-Factor(R-Work) 0.2285
    R-Factor(R-Free) 0.2072
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 18.26
    f_plane_restr 0.005
    f_chiral_restr 0.194
    f_angle_d 1.229
    f_bond_d 0.014
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3672
    Nucleic Acid Atoms 0
    Heterogen Atoms 197
    Solvent Atoms 67
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.8_1069)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction HKL