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X-RAY DIFFRACTION
Materials and Methods page
4HGW
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion
    pH 8
    Temperature 298.0
    Details PEG 8000, MgCl, Tris, ZnCl, vapor diffusion, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 45.71 α = 90
    b = 81.3 β = 90
    c = 131.42 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type RIGAKU RAXIS IV++
    Details mirrors
    Collection Date 2007-10-25
     
    Diffraction Radiation
    Diffraction Protocol single wavelength
     
    Diffraction Source
    Source ROTATING ANODE
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.65
    Resolution(Low) 19.92
    Number Reflections(Observed) 57408
    Percent Possible(Observed) 95.9
    R Merge I(Observed) 0.05
    Redundancy 4.0
     
    High Resolution Shell Details
    Resolution(High) 1.65
    Resolution(Low) 1.71
    Percent Possible(All) 97.6
    R Merge I(Observed) 0.253
    Mean I Over Sigma(Observed) 4.0
    Redundancy 3.71
    Number Unique Reflections(All) 5748
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.65
    Resolution(Low) 19.92
    Cut-off Sigma(F) 1.38
    Number of Reflections(Observed) 57382
    Number of Reflections(R-Free) 2915
    Percent Reflections(Observed) 95.78
    R-Factor(Observed) 0.1772
    R-Work 0.1761
    R-Free 0.1978
     
    Temperature Factor Modeling
    Mean Isotropic B Value 29.158
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.649
    Shell Resolution(Low) 1.676
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2551
    R-Factor(R-Work) 0.2206
    R-Factor(R-Free) 0.2634
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.676
    Shell Resolution(Low) 1.7049
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2580
    R-Factor(R-Work) 0.2082
    R-Factor(R-Free) 0.2453
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7049
    Shell Resolution(Low) 1.7359
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 2594
    R-Factor(R-Work) 0.2029
    R-Factor(R-Free) 0.2716
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7359
    Shell Resolution(Low) 1.7693
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2610
    R-Factor(R-Work) 0.207
    R-Factor(R-Free) 0.2614
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7693
    Shell Resolution(Low) 1.8053
    Number of Reflections(R-Free) 121
    Number of Reflections(R-Work) 2601
    R-Factor(R-Work) 0.2085
    R-Factor(R-Free) 0.2753
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8053
    Shell Resolution(Low) 1.8446
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2628
    R-Factor(R-Work) 0.2103
    R-Factor(R-Free) 0.2797
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8446
    Shell Resolution(Low) 1.8875
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2597
    R-Factor(R-Work) 0.1954
    R-Factor(R-Free) 0.2666
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8875
    Shell Resolution(Low) 1.9346
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2601
    R-Factor(R-Work) 0.1909
    R-Factor(R-Free) 0.2296
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9346
    Shell Resolution(Low) 1.9869
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2631
    R-Factor(R-Work) 0.19
    R-Factor(R-Free) 0.2234
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9869
    Shell Resolution(Low) 2.0453
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2579
    R-Factor(R-Work) 0.1831
    R-Factor(R-Free) 0.2192
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0453
    Shell Resolution(Low) 2.1112
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2589
    R-Factor(R-Work) 0.1783
    R-Factor(R-Free) 0.24
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1112
    Shell Resolution(Low) 2.1866
    Number of Reflections(R-Free) 121
    Number of Reflections(R-Work) 2605
    R-Factor(R-Work) 0.1824
    R-Factor(R-Free) 0.1769
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1866
    Shell Resolution(Low) 2.274
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2610
    R-Factor(R-Work) 0.1709
    R-Factor(R-Free) 0.1804
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.274
    Shell Resolution(Low) 2.3774
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2543
    R-Factor(R-Work) 0.1734
    R-Factor(R-Free) 0.1864
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3774
    Shell Resolution(Low) 2.5025
    Number of Reflections(R-Free) 115
    Number of Reflections(R-Work) 2572
    R-Factor(R-Work) 0.1821
    R-Factor(R-Free) 0.1819
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5025
    Shell Resolution(Low) 2.6589
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2549
    R-Factor(R-Work) 0.18
    R-Factor(R-Free) 0.2083
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6589
    Shell Resolution(Low) 2.8637
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2562
    R-Factor(R-Work) 0.1756
    R-Factor(R-Free) 0.2288
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8637
    Shell Resolution(Low) 3.1509
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2577
    R-Factor(R-Work) 0.1784
    R-Factor(R-Free) 0.2028
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1509
    Shell Resolution(Low) 3.6045
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2597
    R-Factor(R-Work) 0.1719
    R-Factor(R-Free) 0.1794
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6045
    Shell Resolution(Low) 4.5324
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2619
    R-Factor(R-Work) 0.1535
    R-Factor(R-Free) 0.181
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.5324
    Shell Resolution(Low) 19.9235
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2672
    R-Factor(R-Work) 0.1696
    R-Factor(R-Free) 0.1578
    Percent Reflections(Observed) 92.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 12.223
    f_plane_restr 0.005
    f_chiral_restr 0.073
    f_angle_d 1.48
    f_bond_d 0.015
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3314
    Nucleic Acid Atoms 0
    Heterogen Atoms 35
    Solvent Atoms 585
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) d*TREK
    Data Reduction (data scaling) DTREK
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction D*trek version: 9.4SSI