POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4HFM
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 4.5
    Temperature 293.0
    Details 100mM KH2PO4/citrate buffer pH 4.5 + 45% PEG 300, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 88.2 α = 90
    b = 149.84 β = 115.53
    c = 66.61 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type DECTRIS PILATUS 6M
    Collection Date 2011-02-02
     
    Diffraction Radiation
    Monochromator SAGITALLY FOCUSED Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I03
    Wavelength List 0.979
    Site DIAMOND
    Beamline I03
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.9
    Resolution(Low) 60.11
    Number Reflections(Observed) 59835
    Redundancy 5.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.9
    Resolution(Low) 57.83
    Cut-off Sigma(I) 2.0
    Number of Reflections(Observed) 56799
    Number of Reflections(R-Free) 3035
    Percent Reflections(Observed) 97.68
    R-Factor(Observed) 0.17456
    R-Work 0.17291
    R-Free 0.20553
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 27.215
    Anisotropic B[1][1] -0.04
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.01
    Anisotropic B[2][2] 0.03
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9
    Shell Resolution(Low) 1.949
    Number of Reflections(R-Free) 222
    Number of Reflections(R-Work) 4064
    R-Factor(R-Work) 0.218
    R-Factor(R-Free) 0.258
    Percent Reflections(Observed) 94.43
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 4.059
    r_scbond_it 2.557
    r_mcangle_it 1.64
    r_mcbond_it 0.92
    r_gen_planes_refined 0.008
    r_chiral_restr 0.119
    r_dihedral_angle_4_deg 18.22
    r_dihedral_angle_3_deg 14.761
    r_dihedral_angle_2_deg 38.646
    r_dihedral_angle_1_deg 6.273
    r_angle_refined_deg 1.612
    r_bond_refined_d 0.016
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5027
    Nucleic Acid Atoms 0
    Heterogen Atoms 96
    Solvent Atoms 307
     
     
  •   Software and Computing Hide
    Computing
    Data Collection GDA
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution MolRep
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building MolRep
    data collection GDA