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X-RAY DIFFRACTION
Materials and Methods page
4HD5
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    Temperature 298.0
    Details 25-30% (w/v) PEG3350, 100mM Tris/HCl, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 36.46 α = 90
    b = 52.76 β = 95.82
    c = 93.64 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
    Diffrn ID 2
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type MAR scanner 300 mm plate
    Details mirrors
    Detector AREA DETECTOR
    Type MAR scanner 300 mm plate
    Details mirrors
     
    Diffraction Radiation
    Monochromator YALE MIRRORS
    Diffraction Protocol SINGLE WAVELENGTH
    Monochromator YALE MIRRORS
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RUH3R
    Wavelength List 1.5418
    Source ROTATING ANODE
    Type RIGAKU RUH3R
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.9
    Resolution(Low) 46.47
    Number Reflections(All) 21606
    Number Reflections(Observed) 21606
    Percent Possible(Observed) 81.34
     
    High Resolution Shell Details
    Resolution(High) 1.9
    Resolution(Low) 1.95
    Percent Possible(All) 59.7
    R Merge I(Observed) 0.326
    Mean I Over Sigma(Observed) 3.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.9
    Resolution(Low) 46.47
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 21606
    Number of Reflections(Observed) 21606
    Number of Reflections(R-Free) 1142
    Percent Reflections(Observed) 81.34
    R-Factor(Observed) 0.17959
    R-Work 0.17836
    R-Free 0.20252
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 16.301
    Anisotropic B[1][1] 0.23
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.38
    Anisotropic B[2][2] 0.25
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.43
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9
    Shell Resolution(Low) 1.952
    Number of Reflections(R-Free) 69
    Number of Reflections(R-Work) 1159
    R-Factor(R-Work) 0.211
    R-Factor(R-Free) 0.252
    Percent Reflections(Observed) 59.79
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.004
    r_chiral_restr 0.064
    r_dihedral_angle_4_deg 10.698
    r_dihedral_angle_3_deg 11.943
    r_dihedral_angle_2_deg 32.624
    r_dihedral_angle_1_deg 5.881
    r_angle_other_deg 0.7
    r_angle_refined_deg 1.097
    r_bond_other_d 0.001
    r_bond_refined_d 0.006
     
    Coordinate Error
    Luzzati Sigma A(Observed) 0.186
    Luzzati Sigma A(R-Free Set) 0.149
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2540
    Nucleic Acid Atoms 0
    Heterogen Atoms 5
    Solvent Atoms 162
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MAR345dtb
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution SAM-T08 - PHASER - CNS
    Structure Refinement REFMAC 5.7.0029
     
    Software
    refinement REFMAC version: 5.7.0029
    model building SAM-T08 version: - PHASER - CNS
    data collection MAR345dtb