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X-RAY DIFFRACTION
Materials and Methods page
4HCZ
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 7.5
    Temperature 277.15
    Details 0.1 M HEPES pH 7.5, 20% PEG 10000, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 88.03 α = 90
    b = 29.67 β = 116.41
    c = 62 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type RIGAKU RAXIS IV++
    Collection Date 2011-01-20
     
    Diffraction Radiation
    Monochromator Ni Filter
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RUH3R
    Wavelength List 1.541
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.85
    Resolution(Low) 23.41
    Number Reflections(All) 12091
    Number Reflections(Observed) 12091
    Percent Possible(Observed) 96.4
    B(Isotropic) From Wilson Plot 25.16
     
    High Resolution Shell Details
    Resolution(High) 1.85
    Resolution(Low) 1.92
    Percent Possible(All) 81.1
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.85
    Resolution(Low) 23.413
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 12091
    Number of Reflections(Observed) 12073
    Number of Reflections(R-Free) 580
    Percent Reflections(Observed) 96.23
    R-Factor(Observed) 0.2058
    R-Work 0.2038
    R-Free 0.2439
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 30.1275
    Anisotropic B[1][1] -3.3304
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -1.231
    Anisotropic B[2][2] -5.0827
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 8.413
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.85
    Shell Resolution(Low) 2.0361
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2667
    R-Factor(R-Work) 0.2898
    R-Factor(R-Free) 0.3932
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0361
    Shell Resolution(Low) 2.3305
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2932
    R-Factor(R-Work) 0.2061
    R-Factor(R-Free) 0.2511
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3305
    Shell Resolution(Low) 2.9353
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2977
    R-Factor(R-Work) 0.2031
    R-Factor(R-Free) 0.2705
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9353
    Shell Resolution(Low) 23.4144
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2917
    R-Factor(R-Work) 0.1886
    R-Factor(R-Free) 0.2066
    Percent Reflections(Observed) 95.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 14.919
    f_plane_restr 0.004
    f_chiral_restr 0.071
    f_angle_d 1.06
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1061
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 161
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CrystalClear
    Data Reduction (intensity integration) d*TREK
    Data Reduction (data scaling) d*TREK
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.6.4_486)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    molecular replacement Phaser
     
     
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