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X-RAY DIFFRACTION
Materials and Methods page
4HAO
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 4.6
    Temperature 289.0
    Details 0.1 M sodium acetate trihydrate pH 4.6, 1 M magnesium sulphate, VAPOR DIFFUSION, SITTING DROP, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 138.09 α = 90
    b = 65.16 β = 124.95
    c = 86.39 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Details mirrors
    Collection Date 2012-06-07
     
    Diffraction Radiation
    Monochromator double crystal monochromator
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 19-ID
    Wavelength List 0.97931
    Site APS
    Beamline 19-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.55
    Resolution(Low) 50
    Number Reflections(All) 20436
    Number Reflections(Observed) 20436
    Percent Possible(Observed) 99.4
    B(Isotropic) From Wilson Plot 72.1
    Redundancy 3.6
     
    High Resolution Shell Details
    Resolution(High) 2.55
    Resolution(Low) 2.59
    Percent Possible(All) 98.6
    Mean I Over Sigma(Observed) 2.1
    R-Sym I(Observed) 0.677
    Redundancy 3.0
    Number Unique Reflections(All) 1006
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.551
    Resolution(Low) 33.747
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 20378
    Number of Reflections(Observed) 20378
    Number of Reflections(R-Free) 1046
    Percent Reflections(Observed) 98.54
    R-Factor(All) 0.188
    R-Factor(Observed) 0.188
    R-Work 0.185
    R-Free 0.241
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Isotropic Thermal Model mixed
    Mean Isotropic B Value 60.2
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5512
    Shell Resolution(Low) 2.6856
    Number of Reflections(Observed) 2755
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2621
    R-Factor(R-Work) 0.2711
    R-Factor(R-Free) 0.3396
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6856
    Shell Resolution(Low) 2.8538
    Number of Reflections(Observed) 2948
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2797
    R-Factor(R-Work) 0.2436
    R-Factor(R-Free) 0.3276
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8538
    Shell Resolution(Low) 3.074
    Number of Reflections(Observed) 2931
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2791
    R-Factor(R-Work) 0.2379
    R-Factor(R-Free) 0.2849
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.074
    Shell Resolution(Low) 3.3831
    Number of Reflections(Observed) 2922
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2788
    R-Factor(R-Work) 0.2059
    R-Factor(R-Free) 0.2838
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3831
    Shell Resolution(Low) 3.872
    Number of Reflections(Observed) 2944
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2792
    R-Factor(R-Work) 0.1948
    R-Factor(R-Free) 0.2673
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.872
    Shell Resolution(Low) 4.876
    Number of Reflections(Observed) 2947
    Number of Reflections(R-Free) 164
    Number of Reflections(R-Work) 2783
    R-Factor(R-Work) 0.1569
    R-Factor(R-Free) 0.2333
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.876
    Shell Resolution(Low) 33.7495
    Number of Reflections(Observed) 2931
    Number of Reflections(R-Free) 171
    Number of Reflections(R-Work) 2760
    R-Factor(R-Work) 0.1717
    R-Factor(R-Free) 0.204
    Percent Reflections(Observed) 96.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.076
    f_dihedral_angle_d 15.287
    f_angle_d 1.122
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4397
    Nucleic Acid Atoms 0
    Heterogen Atoms 54
    Solvent Atoms 48
     
     
  •   Software and Computing Hide
    Computing
    Data Collection SBCCOLLECT, HKL3000
    Data Reduction (intensity integration) HKL-3000
    Data Reduction (data scaling) HKL-3000
    Structure Solution HKL3000, Molrep
    Structure Refinement PHENIX (phenix.refine: dev_1032)
     
    Software
    refinement PHENIX version: (phenix.refine: dev_1032)
    model building Molrep
    model building HKL3000
    data collection HKL3000
    data collection SBCCOLLECT