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X-RAY DIFFRACTION
Materials and Methods page
4H9N
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 277.0
    Details 1.8 M Na/K-phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 107.46 α = 90
    b = 107.46 β = 90
    c = 90.48 γ = 90
     
    Space Group
    Space Group Name:    P 43 21 2
     
     
  •   Diffraction Hide
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X29A
    Wavelength List 0.979
    Site NSLS
    Beamline X29A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.95
    Resolution(Low) 50
    Number Reflections(All) 39270
    Number Reflections(Observed) 39270
    Percent Possible(Observed) 99.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.95
    Resolution(Low) 48.058
    Cut-off Sigma(I) 5.1
    Cut-off Sigma(F) 1.36
    Number of Reflections(Observed) 39145
    Number of Reflections(R-Free) 1989
    Percent Reflections(Observed) 99.93
    R-Factor(All) 0.2087
    R-Factor(Observed) 0.19
    R-Work 0.189
    R-Free 0.2087
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 0.877
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.877
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.1144
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.95
    Shell Resolution(Low) 1.9988
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2596
    R-Factor(R-Work) 0.2268
    R-Factor(R-Free) 0.2576
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9988
    Shell Resolution(Low) 2.0528
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2615
    R-Factor(R-Work) 0.2148
    R-Factor(R-Free) 0.2663
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0528
    Shell Resolution(Low) 2.1132
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2614
    R-Factor(R-Work) 0.2017
    R-Factor(R-Free) 0.2379
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1132
    Shell Resolution(Low) 2.1814
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2610
    R-Factor(R-Work) 0.196
    R-Factor(R-Free) 0.2124
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1814
    Shell Resolution(Low) 2.2594
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2602
    R-Factor(R-Work) 0.1958
    R-Factor(R-Free) 0.2418
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2594
    Shell Resolution(Low) 2.3498
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2629
    R-Factor(R-Work) 0.2009
    R-Factor(R-Free) 0.2499
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3498
    Shell Resolution(Low) 2.4568
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2638
    R-Factor(R-Work) 0.1935
    R-Factor(R-Free) 0.2478
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4568
    Shell Resolution(Low) 2.5863
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2641
    R-Factor(R-Work) 0.1964
    R-Factor(R-Free) 0.2189
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5863
    Shell Resolution(Low) 2.7483
    Number of Reflections(R-Free) 116
    Number of Reflections(R-Work) 2665
    R-Factor(R-Work) 0.1991
    R-Factor(R-Free) 0.2159
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7483
    Shell Resolution(Low) 2.9605
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2644
    R-Factor(R-Work) 0.202
    R-Factor(R-Free) 0.2283
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9605
    Shell Resolution(Low) 3.2584
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2658
    R-Factor(R-Work) 0.1992
    R-Factor(R-Free) 0.2122
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2584
    Shell Resolution(Low) 3.7297
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2678
    R-Factor(R-Work) 0.1739
    R-Factor(R-Free) 0.2071
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7297
    Shell Resolution(Low) 4.6984
    Number of Reflections(R-Free) 166
    Number of Reflections(R-Work) 2706
    R-Factor(R-Work) 0.156
    R-Factor(R-Free) 0.1526
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.6984
    Shell Resolution(Low) 48.058
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2860
    R-Factor(R-Work) 0.1995
    R-Factor(R-Free) 0.2161
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.065
    f_dihedral_angle_d 15.876
    f_angle_d 0.969
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3093
    Nucleic Acid Atoms 0
    Heterogen Atoms 45
    Solvent Atoms 355
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.7.2_869)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.2_869)
    model building PHASER
    data collection HKL-2000