Warning
You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.
MyPDB
Toggle navigation
RCSB PDB
Deposit
Prepare Data
pdb_extract
SF-Tool
Ligand Expo
MAXIT
Validate Data
Validation Server
Information for Journals
Validation Task Forces
Deposit Data
wwPDB OneDep System
Deposition Help & Resources
Deposit FAQ
Tutorials
Annotation Policies
Processing Procedures
PDBx/mmCIF Dictionary
Chemical Component Dictionary
PDB Format Guide
BioSync Beamlines/Facilities
Related Tools
Search
Advanced Search
Drilldown Search
Unreleased & New Entries
Sequences
Ligands
Drugs & Drug Targets
Browse by Annotation
PDB Statistics
Visualize
Visualize3DViewer
PoseView
Protein Feature View
Human Gene View
Pathway View
Analyze
Sequence & Structure Alignment
Protein Symmetry
Structure Quality
Map Genomic Position to Protein
PDB Statistics
Third Party Tools
Download
Coordinates & Experimental Data
Sequences
Ligands
FTP Archive & Services
HTTPS Services
Other Services
RESTful Web Services
Learn
About
Molecule of the Month
Browse all Resources
Educational Resources
Curricula
Guide to PDB Data
News and Events
More
Contact Us
Citing Us
Usage & Privacy
Help Topics
About RCSB PDB
Team Members
Advisory Committee
News
Publications
Careers
139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
Go
Advanced
Search
|
Browse
by Annotations
|
Search
History
|
Previous
Results
Navigation Tabs
Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
4H89
The Structure of a GCN5-Related N-Acetyltransferase from Kribbella flavida
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly (gz) (A+S)
X-RAY DIFFRACTION Experimental Data & Validation
X-ray Experimental Help
Crystallization
Crystalization Experiments
Method
Vapor Diffusion Sitting Drop
pH
7.5
Temperature
297.0
Details
0.1M HEPES:NaOH pH 7.5, 1.4M Sodium Citrate, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Data
Unit Cell
Length (Å)
Angle (°)
a = 42.48
α = 90
b = 64.91
β = 100.68
c = 56.57
γ = 90
Symmetry
Space Group
C 1 2 1
Diffraction
Diffraction Experiment
ID #
Data Collection Temperature
1
100
Diffraction Detector
Detector
Diffraction Type
Details
Collection Date
CCD
ADSC QUANTUM 315r
--
2012-07-08
Diffraction Radiation
Monochromator
Protocol
SAGITALLY FOCUSED Si(111)
MAD
Diffraction Detector Source
Source
Type
Wavelength List
Synchrotron Site
Beamline
SYNCHROTRON
APS BEAMLINE 19-ID
0.97931, 0.97945
APS
19-ID
Data Collection
Overall
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Merge I (Observed)
R Sym I (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
1.37
50
95.8
0.1
--
--
4.6
30480
30480
--
-3.0
16.4
High Resolution Shell
Resolution (High)
Resolution (Low)
Percent Possible (All)
R Merge I (Observed)
R-Sym I (Observed)
Mean I Over Sigma (Observed)
Redundancy
Number Unique Reflections (All)
1.37
1.39
92.5
0.351
--
--
3.9
1467
Refinement
Statistics
Structure Solution Method
Refinement High Resolution
Refinement Low Resolution
Cut-off Sigma (I)
Cut-off Sigma (F)
Number of Reflections (All)
Number of Reflections (Observed)
Number of Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (All)
R-Factor (Observed)
R-Work
R-Free
R-Free Selection Details
MAD
1.37
18.45
--
0.0
30373
30373
1541
95.76
0.1196
0.1196
0.1175
0.1587
RANDOM
High Resolution Shell
Refinement method
Shell Resolution (High)
Shell Resolution (Low)
# of Reflections (Observed)
# of Reflections (R-Free)
# of Reflections (R-Work)
R-Factor (R-Work)
R-Factor (R-Free)
R-Factor (R-Free Error)
Percent Reflections (Observed)
X Ray Diffraction
1.37
1.405
--
107
2061
0.162
0.206
--
93.13
Temperature Factor Modeling
Temperature Factor
Value
Mean Isotropic B
22.4968
Anisotropic B[1][1]
-0.23
Anisotropic B[1][2]
0.0
Anisotropic B[1][3]
-1.65
Anisotropic B[2][2]
0.86
Anisotropic B[2][3]
0.0
Anisotropic B[3][3]
-0.3
RMS Deviations
Key
Refinement Restraint Deviation
r_gen_planes_refined
0.009
r_gen_planes_other
0.002
r_angle_other_deg
0.881
r_angle_refined_deg
1.689
r_dihedral_angle_4_deg
17.185
r_rigid_bond_restr
3.763
r_dihedral_angle_1_deg
6.188
r_bond_refined_d
0.015
r_dihedral_angle_2_deg
33.307
r_dihedral_angle_3_deg
12.548
r_sphericity_bonded
11.727
r_bond_other_d
0.001
r_chiral_restr
0.113
r_sphericity_free
38.871
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms
Numbers
Protein Atoms
1283
Nucleic Acid Atoms
0
Heterogen Atoms
0
Solvent Atoms
277
Software
Software
Software Name
Purpose
DENZO
data reduction
SCALEPACK
data scaling
REFMAC
refinement
PDB_EXTRACT
data extraction version: 3.11
SBC-Collect
data collection
HKL-3000
data reduction
HKL-3000
data scaling
HKL-3000
phasing
SHELXD
phasing
SHELXE
model building
MLPHARE
phasing
DM
phasing
SOLVE
phasing
RESOLVE
phasing
ARP/wARP
model building
CCP4
phasing
O
model building
Coot
model building