POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
4H6W
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, hanging drop
    Temperature 281.0
    Details PEG 20000, vapor diffusion, hanging drop, temperature 281K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 49.7 α = 90
    b = 145.93 β = 90
    c = 193.5 γ = 90
     
    Space Group
    Space Group Name:    I 2 2 2
     
     
  •   Diffraction Hide
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 21-ID-D
    Wavelength 0.97872
    Site APS
    Beamline 21-ID-D
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.45
    Resolution(Low) 50
    Number Reflections(Observed) 24491
    Percent Possible(Observed) 93.2
    R Merge I(Observed) 0.082
    Redundancy 5.5
     
    High Resolution Shell Details
    Resolution(High) 2.45
    Resolution(Low) 2.54
    Percent Possible(All) 67.2
    R Merge I(Observed) 0.491
    Redundancy 3.5
    Number Unique Reflections(All) 1729
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.45
    Resolution(Low) 25.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 24490
    Number of Reflections(R-Free) 1235
    Percent Reflections(Observed) 93.03
    R-Factor(Observed) 0.189
    R-Work 0.1867
    R-Free 0.2305
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 47.672
    Anisotropic B[1][1] 0.28
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.42
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.7
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.455
    Shell Resolution(Low) 2.518
    Number of Reflections(R-Free) 57
    Number of Reflections(R-Work) 1112
    R-Factor(R-Work) 0.283
    R-Factor(R-Free) 0.349
    Percent Reflections(Observed) 61.43
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.005
    r_chiral_restr 0.079
    r_dihedral_angle_4_deg 13.324
    r_dihedral_angle_3_deg 16.295
    r_dihedral_angle_2_deg 44.31
    r_dihedral_angle_1_deg 5.862
    r_angle_refined_deg 1.265
    r_bond_refined_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4052
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 156
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL
    Data Reduction (data scaling) HKL
    Structure Refinement REFMAC 5.7.0029
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5 version: 5.7.0029
    data reduction HKL