X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6.5
Temperature 289.15
Details 12% PEG 4000, 100 mM Sodium cacodylate, 0.1 mM Polyethylene glycol dodecyl ether , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289.15K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 313.23 α = 90
b = 168.04 β = 109.42
c = 160.46 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RIGAKU SATURN 944 -- 2012-03-12
Diffraction Radiation
Monochromator Protocol
Rigaku Osmic Varimax SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.9 27.7 97.0 0.344 -- -- 3.7 71370 69515 0.0 0.0 40.9
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.9 4.11 97.0 0.685 -- 2.0 3.7 10078

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.9 27.7 -- 1.42 67120 63875 3245 89.56 -- 0.2851 0.2838 0.3089 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.9 3.9581 -- 112 2288 0.475 0.4951 -- 77.0
X Ray Diffraction 3.9581 4.0198 -- 78 1459 0.5009 0.5534 -- 50.0
X Ray Diffraction 4.0198 4.0855 -- 147 2437 0.3735 0.435 -- 85.0
X Ray Diffraction 4.0855 4.1557 -- 135 2436 0.3518 0.358 -- 84.0
X Ray Diffraction 4.1557 4.231 -- 135 2494 0.3281 0.3527 -- 84.0
X Ray Diffraction 4.231 4.3121 -- 140 2666 0.2945 0.3476 -- 91.0
X Ray Diffraction 4.3121 4.3998 -- 131 2734 0.2921 0.2792 -- 94.0
X Ray Diffraction 4.3998 4.495 -- 131 2658 0.2922 0.3253 -- 91.0
X Ray Diffraction 4.495 4.5992 -- 125 2546 0.2752 0.2905 -- 85.0
X Ray Diffraction 4.5992 4.7136 -- 136 2654 0.2307 0.2831 -- 90.0
X Ray Diffraction 4.7136 4.8404 -- 149 2697 0.2414 0.2549 -- 92.0
X Ray Diffraction 4.8404 4.9821 -- 146 2722 0.2479 0.2419 -- 93.0
X Ray Diffraction 4.9821 5.1419 -- 147 2756 0.244 0.2571 -- 93.0
X Ray Diffraction 5.1419 5.3244 -- 138 2737 0.2495 0.2918 -- 93.0
X Ray Diffraction 5.3244 5.536 -- 154 2761 0.2793 0.2921 -- 93.0
X Ray Diffraction 5.536 5.7858 -- 150 2760 0.2743 0.3369 -- 94.0
X Ray Diffraction 5.7858 6.0878 -- 181 2744 0.2843 0.3124 -- 95.0
X Ray Diffraction 6.0878 6.4646 -- 145 2813 0.2783 0.3193 -- 95.0
X Ray Diffraction 6.4646 6.9565 -- 154 2807 0.2893 0.3119 -- 95.0
X Ray Diffraction 6.9565 7.6432 -- 141 2817 0.2605 0.2926 -- 95.0
X Ray Diffraction 7.6432 8.7189 -- 166 2811 0.2229 0.2502 -- 96.0
X Ray Diffraction 8.7189 10.8734 -- 147 2895 0.1991 0.2152 -- 97.0
X Ray Diffraction 10.8734 27.7143 -- 157 2938 0.2402 0.2711 -- 97.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.832
f_dihedral_angle_d 15.225
f_chiral_restr 0.052
f_bond_d 0.003
f_plane_restr 0.003
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 27963
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 0

Software

Software
Software Name Purpose
StructureStudio data collection
PHASER phasing version: MR
PHENIX refinement version: (phenix.refine: 1.8_1069)
MOSFLM data reduction
SCALA data scaling