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X-RAY DIFFRACTION
Materials and Methods page
4H4D
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 6.5
    Temperature 293.0
    Details 0.1 M Bis-Tris, 0.2 M ammonium sulfate, 25% PEG3350, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 71.32 α = 90
    b = 80.71 β = 90
    c = 112.11 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type PSI PILATUS 6M
    Collection Date 2012-05-13
     
    Diffraction Radiation
    Monochromator double-crystal fixed-exit Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X06SA
    Wavelength List 1.0
    Site SLS
    Beamline X06SA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.35
    Resolution(Low) 30
    Number Reflections(All) 142270
    Number Reflections(Observed) 139140
    Percent Possible(Observed) 97.8
    Redundancy 3.9
     
    High Resolution Shell Details
    Resolution(High) 1.35
    Resolution(Low) 1.45
    Percent Possible(All) 98.1
    Mean I Over Sigma(Observed) 3.1
    R-Sym I(Observed) 0.497
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.35
    Resolution(Low) 10.0
    Number of Reflections(all) 139139
    Number of Reflections(Observed) 131832
    Number of Reflections(R-Free) 6938
    Percent Reflections(Observed) 97.59
    R-Factor(Observed) 0.19174
    R-Work 0.19054
    R-Free 0.21441
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 19.627
    Anisotropic B[1][1] 0.07
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.35
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.28
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.35
    Shell Resolution(Low) 1.384
    Number of Reflections(R-Free) 498
    Number of Reflections(R-Work) 9478
    R-Factor(R-Work) 0.248
    R-Factor(R-Free) 0.267
    Percent Reflections(Observed) 97.46
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.014
    r_chiral_restr 0.161
    r_dihedral_angle_4_deg 17.439
    r_dihedral_angle_3_deg 14.285
    r_dihedral_angle_2_deg 39.578
    r_dihedral_angle_1_deg 5.664
    r_angle_refined_deg 2.352
    r_bond_refined_d 0.022
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4773
    Nucleic Acid Atoms 0
    Heterogen Atoms 46
    Solvent Atoms 731
     
     
  •   Software and Computing Hide
    Computing
    Data Collection XDS
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution REFMAC
    Structure Refinement REFMAC 5.7.0029
     
    Software
    refinement REFMAC version: 5.6.0117
    model building REFMAC version: 5.6.0117
    data collection XDS