X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 7.5
Temperature 293.0
Details 100 mM HEPES, pH 7.5, 1 M sodium acetate, 50 mM cadmium acetate, 5% glycerol, VAPOR DIFFUSION, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 65.37 α = 90
b = 108.4 β = 90
c = 112.86 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD OXFORD ONYX CCD -- 2011-10-15
Diffraction Radiation
Monochromator Protocol
graphite SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE OTHER 1.5418 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 20 99.5 0.104 0.115 -- 5.9 63630 63630 2.0 2.0 18.2

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
UV-RIP 1.9 14.86 -- 1.01 63616 63616 3257 99.67 -- 0.1585 0.1574 0.1774 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.9215 -- 211 3754 0.2211 0.2236 -- 96.0
X Ray Diffraction 1.9215 1.9441 -- 199 3819 0.2 0.2374 -- 100.0
X Ray Diffraction 1.9441 1.9677 -- 206 3837 0.1917 0.2338 -- 100.0
X Ray Diffraction 1.9677 1.9926 -- 200 3867 0.1822 0.1985 -- 100.0
X Ray Diffraction 1.9926 2.0187 -- 210 3849 0.1841 0.1942 -- 100.0
X Ray Diffraction 2.0187 2.0463 -- 216 3858 0.1832 0.2408 -- 100.0
X Ray Diffraction 2.0463 2.0755 -- 205 3815 0.1873 0.2165 -- 100.0
X Ray Diffraction 2.0755 2.1064 -- 197 3880 0.1638 0.2037 -- 100.0
X Ray Diffraction 2.1064 2.1392 -- 229 3798 0.1598 0.1829 -- 100.0
X Ray Diffraction 2.1392 2.1742 -- 217 3909 0.1568 0.1709 -- 100.0
X Ray Diffraction 2.1742 2.2115 -- 189 3818 0.1535 0.1832 -- 100.0
X Ray Diffraction 2.2115 2.2516 -- 193 3862 0.1511 0.197 -- 100.0
X Ray Diffraction 2.2516 2.2948 -- 185 3862 0.1499 0.1669 -- 100.0
X Ray Diffraction 2.2948 2.3414 -- 188 3852 0.1558 0.1643 -- 100.0
X Ray Diffraction 2.3414 2.3921 -- 243 3824 0.1455 0.1581 -- 100.0
X Ray Diffraction 2.3921 2.4475 -- 217 3837 0.1448 0.1727 -- 100.0
X Ray Diffraction 2.4475 2.5085 -- 201 3886 0.1492 0.1598 -- 100.0
X Ray Diffraction 2.5085 2.576 -- 202 3847 0.1509 0.1811 -- 100.0
X Ray Diffraction 2.576 2.6513 -- 238 3818 0.1555 0.1792 -- 100.0
X Ray Diffraction 2.6513 2.7364 -- 209 3844 0.1549 0.1895 -- 100.0
X Ray Diffraction 2.7364 2.8336 -- 230 3866 0.1594 0.1768 -- 100.0
X Ray Diffraction 2.8336 2.9462 -- 237 3822 0.163 0.1842 -- 100.0
X Ray Diffraction 2.9462 3.0791 -- 190 3859 0.1577 0.1626 -- 100.0
X Ray Diffraction 3.0791 3.2399 -- 210 3839 0.1594 0.1821 -- 100.0
X Ray Diffraction 3.2399 3.4405 -- 207 3862 0.1612 0.1708 -- 100.0
X Ray Diffraction 3.4405 3.7024 -- 177 3865 0.1489 0.1804 -- 100.0
X Ray Diffraction 3.7024 4.068 -- 227 3846 0.1367 0.1446 -- 100.0
X Ray Diffraction 4.068 4.6409 -- 199 3837 0.1242 0.14 -- 99.0
X Ray Diffraction 4.6409 5.789 -- 178 3843 0.1406 0.1282 -- 99.0
X Ray Diffraction 5.789 14.8609 -- 203 3803 0.1687 0.1932 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.08
f_dihedral_angle_d 13.266
f_angle_d 1.107
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4580
Nucleic Acid Atoms 0
Heterogen Atoms 8
Solvent Atoms 315

Software

Computing
Computing Package Purpose
CrysAllisPro Data Collection
XDS Data Reduction (intensity integration)
XSCALE Data Reduction (data scaling)
SHELXD Structure Solution
PHENIX (phenix.refine: 1.8_1069) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8_1069) refinement
SHELXD model building
CrysAllisPro data collection