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X-RAY DIFFRACTION
Materials and Methods page
4H1S
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 7
    Temperature 277.0
    Details SPG buffer 0.1M pH4.0, 15% Peg 1500, drop volumes 200nl plus 200nl, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 54.91 α = 90
    b = 95.01 β = 90
    c = 230.29 γ = 90
     
    Space Group
    Space Group Name:    P 2 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 6M
    Collection Date 2012-03-15
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I02
    Wavelength List 0.9173
    Site DIAMOND
    Beamline I02
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.2
    Resolution(Low) 29.86
    Number Reflections(Observed) 62077
     
    High Resolution Shell Details
    Resolution(High) 2.2
    Resolution(Low) 2.33
    Percent Possible(All) 97.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.2
    Resolution(Low) 29.86
    Cut-off Sigma(F) 2.0
    Number of Reflections(Observed) 62063
    Number of Reflections(R-Free) 2000
    Percent Reflections(Observed) 99.43
    R-Factor(Observed) 0.1762
    R-Work 0.1748
    R-Free 0.2168
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2
    Shell Resolution(Low) 2.2522
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 3957
    R-Factor(R-Work) 0.2234
    R-Factor(R-Free) 0.2932
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2522
    Shell Resolution(Low) 2.313
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 4241
    R-Factor(R-Work) 0.2036
    R-Factor(R-Free) 0.2827
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.313
    Shell Resolution(Low) 2.3811
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 4306
    R-Factor(R-Work) 0.1929
    R-Factor(R-Free) 0.2684
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3811
    Shell Resolution(Low) 2.4579
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 4216
    R-Factor(R-Work) 0.1888
    R-Factor(R-Free) 0.268
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4579
    Shell Resolution(Low) 2.5457
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 4278
    R-Factor(R-Work) 0.1975
    R-Factor(R-Free) 0.224
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5457
    Shell Resolution(Low) 2.6476
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 4270
    R-Factor(R-Work) 0.1775
    R-Factor(R-Free) 0.2339
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6476
    Shell Resolution(Low) 2.768
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 4278
    R-Factor(R-Work) 0.181
    R-Factor(R-Free) 0.2209
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.768
    Shell Resolution(Low) 2.9138
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 4271
    R-Factor(R-Work) 0.1802
    R-Factor(R-Free) 0.2334
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9138
    Shell Resolution(Low) 3.0962
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 4290
    R-Factor(R-Work) 0.1892
    R-Factor(R-Free) 0.2388
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0962
    Shell Resolution(Low) 3.3349
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 4291
    R-Factor(R-Work) 0.1851
    R-Factor(R-Free) 0.2482
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3349
    Shell Resolution(Low) 3.67
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 4354
    R-Factor(R-Work) 0.1752
    R-Factor(R-Free) 0.2063
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.67
    Shell Resolution(Low) 4.1998
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 4341
    R-Factor(R-Work) 0.1471
    R-Factor(R-Free) 0.1751
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1998
    Shell Resolution(Low) 5.2865
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 4384
    R-Factor(R-Work) 0.1405
    R-Factor(R-Free) 0.1948
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.2865
    Shell Resolution(Low) 29.8667
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 4586
    R-Factor(R-Work) 0.1802
    R-Factor(R-Free) 0.1684
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.078
    f_dihedral_angle_d 13.067
    f_angle_d 1.131
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8079
    Nucleic Acid Atoms 0
    Heterogen Atoms 42
    Solvent Atoms 577
     
     
  •   Software and Computing Hide
    Computing
    Data Collection DNA
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution Phaser
    Structure Refinement PHENIX (phenix.refine: 1.8_1069)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8_1069)
    model building Phaser
    data collection DNA