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X-RAY DIFFRACTION
Materials and Methods page
4H1L
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 298.0
    Details 0.1M Ammonium tartrate dibasic, 12% PEG 3350 , pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 186.72 α = 90
    b = 186.72 β = 90
    c = 166.7 γ = 120
     
    Space Group
    Space Group Name:    P 63
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 8.2.2
    Wavelength List 1
    Site ALS
    Beamline 8.2.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 3.3
    Resolution(Low) 20
    Number Reflections(All) 50237
    Number Reflections(Observed) 46186
    Percent Possible(Observed) 91.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.3
    Resolution(Low) 19.826
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 50343
    Number of Reflections(Observed) 44267
    Number of Reflections(R-Free) 2346
    Percent Reflections(Observed) 87.93
    R-Factor(Observed) 0.2643
    R-Work 0.2633
    R-Free 0.2846
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 12.0564
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 12.0564
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -24.1129
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2791
    Shell Resolution(Low) 3.3607
    Number of Reflections(R-Free) 74
    Number of Reflections(R-Work) 1629
    R-Factor(R-Work) 0.4407
    R-Factor(R-Free) 0.4314
    Percent Reflections(Observed) 48.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3607
    Shell Resolution(Low) 3.4511
    Number of Reflections(R-Free) 97
    Number of Reflections(R-Work) 2113
    R-Factor(R-Work) 0.4298
    R-Factor(R-Free) 0.4281
    Percent Reflections(Observed) 62.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4511
    Shell Resolution(Low) 3.5521
    Number of Reflections(R-Free) 121
    Number of Reflections(R-Work) 2566
    R-Factor(R-Work) 0.4144
    R-Factor(R-Free) 0.3917
    Percent Reflections(Observed) 75.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5521
    Shell Resolution(Low) 3.6661
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2977
    R-Factor(R-Work) 0.3917
    R-Factor(R-Free) 0.4138
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6661
    Shell Resolution(Low) 3.7962
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 3096
    R-Factor(R-Work) 0.3573
    R-Factor(R-Free) 0.375
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7962
    Shell Resolution(Low) 3.9471
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 3126
    R-Factor(R-Work) 0.3337
    R-Factor(R-Free) 0.3463
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9471
    Shell Resolution(Low) 4.1252
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 3154
    R-Factor(R-Work) 0.2845
    R-Factor(R-Free) 0.3188
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1252
    Shell Resolution(Low) 4.3405
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 3283
    R-Factor(R-Work) 0.2559
    R-Factor(R-Free) 0.2382
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3405
    Shell Resolution(Low) 4.6093
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 3308
    R-Factor(R-Work) 0.2274
    R-Factor(R-Free) 0.263
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.6093
    Shell Resolution(Low) 4.96
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 3334
    R-Factor(R-Work) 0.2072
    R-Factor(R-Free) 0.2376
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.96
    Shell Resolution(Low) 5.4497
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 3401
    R-Factor(R-Work) 0.2105
    R-Factor(R-Free) 0.2217
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.4497
    Shell Resolution(Low) 6.2169
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 3415
    R-Factor(R-Work) 0.2136
    R-Factor(R-Free) 0.2318
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.2169
    Shell Resolution(Low) 7.754
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 3438
    R-Factor(R-Work) 0.2103
    R-Factor(R-Free) 0.2523
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.754
    Shell Resolution(Low) 19.8264
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 3493
    R-Factor(R-Work) 0.21
    R-Factor(R-Free) 0.2463
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.092
    f_dihedral_angle_d 20.012
    f_angle_d 1.502
    f_bond_d 0.013
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 9630
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASES
    Structure Refinement PHENIX (phenix.refine: 1.7_629)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_629)
    model building PHASES
    data collection HKL-2000