X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.3
Temperature 293.0
Details pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 157.2 α = 90
b = 157.2 β = 90
c = 363.28 γ = 120
Symmetry
Space Group P 61 2 2

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2006-07-07
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID -- APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.07 34.57 -- -- -- -- -- 50067 50067 -- -- 91.83

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.07 34.567 -- 1.35 -- 49966 2544 99.07 -- 0.2148 0.2136 0.238 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.0682 3.1272 -- 114 2452 0.306 0.3506 -- 94.0
X Ray Diffraction 3.1272 3.191 -- 125 2630 0.2992 0.3784 -- 100.0
X Ray Diffraction 3.191 3.2603 -- 134 2593 0.2824 0.3224 -- 100.0
X Ray Diffraction 3.2603 3.3361 -- 143 2621 0.2633 0.2831 -- 100.0
X Ray Diffraction 3.3361 3.4194 -- 154 2608 0.252 0.3029 -- 100.0
X Ray Diffraction 3.4194 3.5118 -- 141 2589 0.235 0.2906 -- 100.0
X Ray Diffraction 3.5118 3.615 -- 138 2620 0.2116 0.2378 -- 100.0
X Ray Diffraction 3.615 3.7316 -- 142 2646 0.2206 0.243 -- 100.0
X Ray Diffraction 3.7316 3.8648 -- 149 2587 0.2082 0.253 -- 100.0
X Ray Diffraction 3.8648 4.0193 -- 139 2653 0.2046 0.2501 -- 100.0
X Ray Diffraction 4.0193 4.202 -- 132 2640 0.2059 0.2233 -- 100.0
X Ray Diffraction 4.202 4.4231 -- 143 2656 0.1913 0.2217 -- 100.0
X Ray Diffraction 4.4231 4.6996 -- 153 2632 0.1851 0.2044 -- 100.0
X Ray Diffraction 4.6996 5.0614 -- 146 2676 0.1885 0.2322 -- 100.0
X Ray Diffraction 5.0614 5.5688 -- 147 2665 0.204 0.215 -- 100.0
X Ray Diffraction 5.5688 6.3703 -- 141 2710 0.2285 0.2565 -- 100.0
X Ray Diffraction 6.3703 8.0094 -- 177 2727 0.1992 0.2037 -- 100.0
X Ray Diffraction 8.0094 34.5688 -- 126 2717 0.2144 0.2238 -- 92.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 115.821
Anisotropic B[1][1] -0.03
Anisotropic B[1][2] -0.03
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.03
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.11
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.168
f_dihedral_angle_d 20.841
f_angle_d 1.28
f_bond_d 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7459
Nucleic Acid Atoms 0
Heterogen Atoms 644
Solvent Atoms 24

Software

Computing
Computing Package Purpose
ADSC Quantum Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
PHENIX (phenix.refine: 1.8.1_1168) Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.7.0029 refinement
ADSC version: Quantum data collection