X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.3
Temperature 293.0
Details pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 159.13 α = 90
b = 159.13 β = 90
c = 362.25 γ = 120
Symmetry
Space Group P 61 2 2

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2006-07-07
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID -- APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.25 48.45 -- -- -- -- -- -- 43609 -- -- 96.84

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.25 48.447 -- 1.35 43485 43451 2185 99.53 -- 0.22 0.2185 0.2473 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.2469 3.3174 -- 138 2483 0.2663 0.2809 -- 98.0
X Ray Diffraction 3.3174 3.3946 -- 143 2529 0.2535 0.3053 -- 100.0
X Ray Diffraction 3.3946 3.4795 -- 120 2538 0.2552 0.2677 -- 100.0
X Ray Diffraction 3.4795 3.5735 -- 147 2519 0.2212 0.2894 -- 100.0
X Ray Diffraction 3.5735 3.6786 -- 123 2552 0.2075 0.2313 -- 100.0
X Ray Diffraction 3.6786 3.7973 -- 131 2574 0.2064 0.2647 -- 100.0
X Ray Diffraction 3.7973 3.933 -- 134 2549 0.1931 0.2557 -- 100.0
X Ray Diffraction 3.933 4.0904 -- 131 2567 0.2028 0.2467 -- 100.0
X Ray Diffraction 4.0904 4.2764 -- 138 2544 0.2025 0.2211 -- 100.0
X Ray Diffraction 4.2764 4.5017 -- 145 2573 0.2001 0.2186 -- 100.0
X Ray Diffraction 4.5017 4.7836 -- 143 2586 0.1957 0.2351 -- 100.0
X Ray Diffraction 4.7836 5.1525 -- 130 2595 0.1964 0.2109 -- 100.0
X Ray Diffraction 5.1525 5.6703 -- 143 2610 0.205 0.253 -- 100.0
X Ray Diffraction 5.6703 6.4892 -- 139 2618 0.2386 0.226 -- 100.0
X Ray Diffraction 6.4892 8.1693 -- 136 2672 0.2132 0.2468 -- 99.0
X Ray Diffraction 8.1693 48.4523 -- 144 2757 0.2525 0.2753 -- 96.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 106.065
Anisotropic B[1][1] 0.02
Anisotropic B[1][2] 0.02
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.02
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.07
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_chiral_restr 0.192
f_dihedral_angle_d 19.586
f_angle_d 1.515
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7386
Nucleic Acid Atoms 0
Heterogen Atoms 601
Solvent Atoms 6

Software

Computing
Computing Package Purpose
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
PHENIX (phenix.refine: 1.8.1_1168) Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.7.0029 refinement