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X-RAY DIFFRACTION
Materials and Methods page
4GZM
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 296.0
    Details 16-18% PEG4000, 8% isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 296K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 40.09 α = 90
    b = 98.81 β = 90.21
    c = 51.99 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Details mirror
    Collection Date 2012-06-18
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-C
    Wavelength List 0.97922
    Site APS
    Beamline 24-ID-C
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.8
    Resolution(Low) 27.82
    Number Reflections(All) 10053
    Number Reflections(Observed) 10037
    Percent Possible(Observed) 99.6
    R Merge I(Observed) 0.119
    B(Isotropic) From Wilson Plot 99.9
    Redundancy 3.6
     
    High Resolution Shell Details
    Resolution(High) 2.8
    Resolution(Low) 2.91
    Percent Possible(All) 99.9
    R Merge I(Observed) 0.578
    Mean I Over Sigma(Observed) 2.4
    R-Sym I(Observed) 0.578
    Redundancy 3.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.8
    Resolution(Low) 27.823
    Number of Reflections(Observed) 9505
    Number of Reflections(R-Free) 485
    Percent Reflections(Observed) 99.32
    R-Factor(Observed) 0.25533
    R-Work 0.25366
    R-Free 0.28805
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 106.461
    Anisotropic B[1][1] 13.76
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.53
    Anisotropic B[2][2] -7.6
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -6.17
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8
    Shell Resolution(Low) 2.873
    Number of Reflections(Observed) 1049
    Number of Reflections(R-Free) 38
    Number of Reflections(R-Work) 710
    R-Factor(R-Work) 0.431
    R-Factor(R-Free) 0.472
    Percent Reflections(Observed) 99.87
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.004
    r_chiral_restr 0.055
    r_dihedral_angle_4_deg 12.142
    r_dihedral_angle_3_deg 15.304
    r_dihedral_angle_2_deg 35.252
    r_dihedral_angle_1_deg 4.687
    r_angle_refined_deg 0.983
    r_bond_refined_d 0.005
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2716
    Nucleic Acid Atoms 0
    Heterogen Atoms 66
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection Executor
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building PHASER
    data collection Executor