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X-RAY DIFFRACTION
Materials and Methods page
4GYU
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 8
    Temperature 289.0
    Details 0.1 M Imidazole:HCl pH 8.0 1.0 M Sodium Citrate Tribasic, VAPOR DIFFUSION, SITTING DROP, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 101.47 α = 90
    b = 101.47 β = 90
    c = 42.68 γ = 120
     
    Space Group
    Space Group Name:    P 65
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Details mirrors
    Collection Date 2011-10-30
     
    Diffraction Radiation
    Monochromator double crystal monochromator
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 19-ID
    Wavelength List 0.97926
    Site APS
    Beamline 19-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.8
    Resolution(Low) 50
    Number Reflections(All) 22017
    Number Reflections(Observed) 22017
    Percent Possible(Observed) 94.1
    B(Isotropic) From Wilson Plot 14.11
    Redundancy 6.9
     
    High Resolution Shell Details
    Resolution(High) 1.8
    Resolution(Low) 1.83
    Percent Possible(All) 65.9
    Mean I Over Sigma(Observed) 4.2
    R-Sym I(Observed) 0.49
    Redundancy 4.2
    Number Unique Reflections(All) 769
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.803
    Resolution(Low) 43.939
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 21999
    Number of Reflections(Observed) 21999
    Number of Reflections(R-Free) 1131
    Percent Reflections(Observed) 94.12
    R-Factor(All) 0.154
    R-Factor(Observed) 0.154
    R-Work 0.152
    R-Free 0.195
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Isotropic Thermal Model mixed
    Mean Isotropic B Value 18.6
    Anisotropic B[1][1] 3.5887
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 3.5887
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -7.1774
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8031
    Shell Resolution(Low) 1.8851
    Number of Reflections(Observed) 1947
    Number of Reflections(R-Free) 97
    Number of Reflections(R-Work) 1850
    R-Factor(R-Work) 0.1751
    R-Factor(R-Free) 0.2287
    Percent Reflections(Observed) 68.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8851
    Shell Resolution(Low) 1.9845
    Number of Reflections(Observed) 2482
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2349
    R-Factor(R-Work) 0.1416
    R-Factor(R-Free) 0.2071
    Percent Reflections(Observed) 85.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9845
    Shell Resolution(Low) 2.1088
    Number of Reflections(Observed) 2901
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2763
    R-Factor(R-Work) 0.1357
    R-Factor(R-Free) 0.1787
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1088
    Shell Resolution(Low) 2.2717
    Number of Reflections(Observed) 2899
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2750
    R-Factor(R-Work) 0.1359
    R-Factor(R-Free) 0.1637
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2717
    Shell Resolution(Low) 2.5003
    Number of Reflections(Observed) 2919
    Number of Reflections(R-Free) 172
    Number of Reflections(R-Work) 2747
    R-Factor(R-Work) 0.1425
    R-Factor(R-Free) 0.1805
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5003
    Shell Resolution(Low) 2.862
    Number of Reflections(Observed) 2915
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2762
    R-Factor(R-Work) 0.1519
    R-Factor(R-Free) 0.2066
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.862
    Shell Resolution(Low) 3.6055
    Number of Reflections(Observed) 2935
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2787
    R-Factor(R-Work) 0.1513
    R-Factor(R-Free) 0.1953
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6055
    Shell Resolution(Low) 43.9521
    Number of Reflections(Observed) 3001
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2860
    R-Factor(R-Work) 0.1654
    R-Factor(R-Free) 0.2067
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.096
    f_dihedral_angle_d 14.386
    f_angle_d 1.235
    f_bond_d 0.01
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1796
    Nucleic Acid Atoms 0
    Heterogen Atoms 48
    Solvent Atoms 130
     
     
  •   Software and Computing Hide
    Computing
    Data Collection SBCCOLLECT, HKL3000
    Data Reduction (intensity integration) HKL-3000
    Data Reduction (data scaling) HKL-3000
    Structure Solution HKL3000, Molrep
    Structure Refinement PHENIX (phenix.refine: 1.7.3_920)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.3_920)
    model building Molrep
    model building HKL3000
    data collection HKL3000
    data collection SBCCOLLECT