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X-RAY DIFFRACTION
Materials and Methods page
4GYH
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.5
    Temperature 298.0
    Details 100mM TRIS, 1.8M Ammonium Sulfate, 20mM 2-mercaptoethanol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 96.19 α = 90
    b = 96.19 β = 90
    c = 83.28 γ = 120
     
    Space Group
    Space Group Name:    P 31 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 173
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type MAR scanner 345 mm plate
    Collection Date 2011-10-26
     
    Diffraction Radiation
    Monochromator Si 111 CHANNEL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.35
    Observed Criterion Sigma(I) 1.35
    Resolution(High) 3
    Resolution(Low) 19.6
    Number Reflections(All) 9141
    Number Reflections(Observed) 8628
    Percent Possible(Observed) 94.4
    Redundancy 7.9
     
    High Resolution Shell Details
    Resolution(High) 3.0
    Resolution(Low) 3.1
    Percent Possible(All) 97.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.005
    Resolution(Low) 19.632
    Cut-off Sigma(F) 1.34
    Number of Reflections(all) 10060
    Number of Reflections(Observed) 8628
    Number of Reflections(R-Free) 869
    Percent Reflections(Observed) 94.39
    R-Factor(Observed) 0.2216
    R-Work 0.215
    R-Free 0.2802
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -5.3941
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -5.3941
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 10.7883
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.005
    Shell Resolution(Low) 3.1925
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 1278
    R-Factor(R-Work) 0.3191
    R-Factor(R-Free) 0.4121
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1925
    Shell Resolution(Low) 3.4378
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 1357
    R-Factor(R-Work) 0.238
    R-Factor(R-Free) 0.3015
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4378
    Shell Resolution(Low) 3.7815
    Number of Reflections(R-Free) 107
    Number of Reflections(R-Work) 950
    R-Factor(R-Work) 0.316
    R-Factor(R-Free) 0.4589
    Percent Reflections(Observed) 72.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7815
    Shell Resolution(Low) 4.3236
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 1358
    R-Factor(R-Work) 0.2146
    R-Factor(R-Free) 0.2704
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3236
    Shell Resolution(Low) 5.4282
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 1369
    R-Factor(R-Work) 0.1608
    R-Factor(R-Free) 0.2207
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.4282
    Shell Resolution(Low) 19.6322
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 1447
    R-Factor(R-Work) 0.1854
    R-Factor(R-Free) 0.2251
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.075
    f_dihedral_angle_d 20.137
    f_angle_d 1.212
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2125
    Nucleic Acid Atoms 0
    Heterogen Atoms 10
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MAR345dtb
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution Phaser
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.1_743)
    model building Phaser
    data collection MAR345dtb