X-RAY DIFFRACTION Experimental Data & Validation


Lost? View more X-Ray Crystallographic info.

Crystallization

Crystalization Experiments
pH 8
Temperature 291.0
Details 50mM Imidazole, 350mM Sodium Acetate, 18% Peg3350, pH 8.0, VAPOR DIFFUSION, temperature 291K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 55.08 α = 90
b = 77.43 β = 114.45
c = 55.12 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RIGAKU SATURN 92 MIRRORS 2011-07-13
Diffraction Radiation
Monochromator Protocol
MIRRORS VARIMAXHF SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 HF -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.2 50 99.9 0.097 0.09 -- 5.8 -- n/a -- -3.0 36.87
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.2 2.28 100.0 0.579 -- 2.95 5.7 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.2 21.06 -- 0.0 36585 36585 3623 86.5 -- 0.237 0.231 0.292 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.1957 2.2246 -- 150 1237 0.2965 0.3568 -- 85.0
X Ray Diffraction 2.2246 2.255 -- 142 1233 0.3004 0.3865 -- 86.0
X Ray Diffraction 2.255 2.2872 -- 154 1223 0.3259 0.412 -- 83.0
X Ray Diffraction 2.2872 2.3213 -- 162 1223 0.3122 0.3884 -- 84.0
X Ray Diffraction 2.3213 2.3575 -- 138 1158 0.298 0.3938 -- 83.0
X Ray Diffraction 2.3575 2.3961 -- 132 1256 0.3239 0.356 -- 82.0
X Ray Diffraction 2.3961 2.4374 -- 95 1173 0.3053 0.3987 -- 79.0
X Ray Diffraction 2.4374 2.4816 -- 107 1120 0.3347 0.3557 -- 77.0
X Ray Diffraction 2.4816 2.5293 -- 128 1146 0.3149 0.3964 -- 78.0
X Ray Diffraction 2.5293 2.5808 -- 165 1122 0.3361 0.4282 -- 79.0
X Ray Diffraction 2.5808 2.6368 -- 108 1188 0.3097 0.3558 -- 78.0
X Ray Diffraction 2.6368 2.6981 -- 113 1113 0.3131 0.3792 -- 76.0
X Ray Diffraction 2.6981 2.7654 -- 124 1025 0.3291 0.3787 -- 71.0
X Ray Diffraction 2.7654 2.84 -- 129 1046 0.2858 0.333 -- 73.0
X Ray Diffraction 2.84 2.9233 -- 116 1100 0.2749 0.3447 -- 75.0
X Ray Diffraction 2.9233 3.0174 -- 130 1171 0.2573 0.3732 -- 80.0
X Ray Diffraction 3.0174 3.1249 -- 147 1321 0.2478 0.2998 -- 90.0
X Ray Diffraction 3.1249 3.2496 -- 162 1510 0.2456 0.2847 -- 100.0
X Ray Diffraction 3.2496 3.3969 -- 149 1441 0.2521 0.29 -- 100.0
X Ray Diffraction 3.3969 3.5752 -- 138 1461 0.2224 0.3019 -- 100.0
X Ray Diffraction 3.5752 3.798 -- 141 1490 0.193 0.2644 -- 100.0
X Ray Diffraction 3.798 4.0893 -- 148 1463 0.1615 0.2369 -- 98.0
X Ray Diffraction 4.0893 4.4972 -- 168 1428 0.1636 0.2213 -- 98.0
X Ray Diffraction 4.4972 5.1397 -- 152 1425 0.1772 0.2289 -- 96.0
X Ray Diffraction 5.1397 6.4445 -- 161 1434 0.2061 0.2628 -- 99.0
X Ray Diffraction 6.4445 21.0567 -- 164 1455 0.2151 0.245 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model Restrained
Anisotropic B[1][1] -0.3399
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 1.9778
Anisotropic B[2][2] 0.388
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.0481
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.003
f_chiral_restr 0.061
f_dihedral_angle_d 21.716
f_angle_d 1.153
f_bond_d 0.014
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2514
Nucleic Acid Atoms 633
Heterogen Atoms 39
Solvent Atoms 102

Software

Computing
Computing Package Purpose
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
CNS Structure Solution
PHENIX (PHENIX.REFINE: 1.7_650) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7_650) refinement
CNS model building
StructureStudio data collection