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139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
4GWE
W116L-OYE1 complexed with (R)-carvone
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly (gz) (A+S)
X-RAY DIFFRACTION Experimental Data & Validation
X-ray Experimental Help
Crystallization
Crystalization Experiments
Method
Vapor Diffusion Hanging Drop
pH
8.3
Temperature
277.0
Details
0.1M hepes, 0.2M MgCl2, 35%peg400, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Data
Unit Cell
Length (Å)
Angle (°)
a = 140.78
α = 90
b = 140.78
β = 90
c = 42.76
γ = 90
Symmetry
Space Group
P 43 21 2
Diffraction
Diffraction Experiment
ID #
Data Collection Temperature
1
100
Diffraction Detector
Detector
Diffraction Type
Details
Collection Date
CCD
ADSC QUANTUM 270
--
2012-04-26
Diffraction Radiation
Monochromator
Protocol
Si(111)
SINGLE WAVELENGTH
Diffraction Detector Source
Source
Type
Wavelength List
Synchrotron Site
Beamline
SYNCHROTRON
NSLS BEAMLINE X26C
0.9795
NSLS
X26C
Data Collection
Overall
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Merge I (Observed)
R Sym I (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
1.45
50
90.5
0.044
--
--
12.8
--
70049
--
1.0
11.32
High Resolution Shell
Resolution (High)
Resolution (Low)
Percent Possible (All)
R Merge I (Observed)
R-Sym I (Observed)
Mean I Over Sigma (Observed)
Redundancy
Number Unique Reflections (All)
1.45
1.48
52.6
0.18
--
10.0
11.7
2020
Refinement
Statistics
Structure Solution Method
Refinement High Resolution
Refinement Low Resolution
Cut-off Sigma (I)
Cut-off Sigma (F)
Number of Reflections (All)
Number of Reflections (Observed)
Number of Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (All)
R-Factor (Observed)
R-Work
R-Free
R-Free Selection Details
MOLECULAR REPLACEMENT
1.45
28.156
--
1.34
--
70001
7038
90.8
--
0.1178
0.1148
0.1449
random
High Resolution Shell
Refinement method
Shell Resolution (High)
Shell Resolution (Low)
# of Reflections (Observed)
# of Reflections (R-Free)
# of Reflections (R-Work)
R-Factor (R-Work)
R-Factor (R-Free)
R-Factor (R-Free Error)
Percent Reflections (Observed)
X Ray Diffraction
1.45
1.4628
--
128
1193
0.0818
0.1481
--
52.0
X Ray Diffraction
1.4628
1.48
--
143
1289
0.0844
0.142
--
57.0
X Ray Diffraction
1.48
1.4981
--
162
1409
0.0853
0.1475
--
62.0
X Ray Diffraction
1.4981
1.517
--
184
1600
0.0813
0.1395
--
70.0
X Ray Diffraction
1.517
1.537
--
214
1921
0.0827
0.139
--
84.0
X Ray Diffraction
1.537
1.5581
--
234
2056
0.0796
0.1517
--
91.0
X Ray Diffraction
1.5581
1.5803
--
230
2063
0.0861
0.1334
--
89.0
X Ray Diffraction
1.5803
1.6039
--
230
2058
0.0839
0.1378
--
91.0
X Ray Diffraction
1.6039
1.629
--
238
2125
0.0855
0.1508
--
93.0
X Ray Diffraction
1.629
1.6557
--
237
2101
0.0823
0.1551
--
92.0
X Ray Diffraction
1.6557
1.6842
--
245
2130
0.0885
0.1471
--
94.0
X Ray Diffraction
1.6842
1.7148
--
251
2183
0.0886
0.1305
--
95.0
X Ray Diffraction
1.7148
1.7478
--
235
2153
0.0884
0.1281
--
95.0
X Ray Diffraction
1.7478
1.7835
--
247
2182
0.0965
0.1411
--
95.0
X Ray Diffraction
1.7835
1.8222
--
246
2199
0.0966
0.1493
--
97.0
X Ray Diffraction
1.8222
1.8646
--
247
2216
0.0991
0.1374
--
96.0
X Ray Diffraction
1.8646
1.9112
--
248
2222
0.1025
0.1491
--
97.0
X Ray Diffraction
1.9112
1.9629
--
247
2230
0.107
0.1312
--
97.0
X Ray Diffraction
1.9629
2.0207
--
244
2217
0.1062
0.1305
--
97.0
X Ray Diffraction
2.0207
2.0859
--
249
2265
0.1033
0.1438
--
98.0
X Ray Diffraction
2.0859
2.1604
--
250
2234
0.1059
0.1281
--
96.0
X Ray Diffraction
2.1604
2.2468
--
255
2244
0.103
0.1352
--
97.0
X Ray Diffraction
2.2468
2.3491
--
254
2291
0.1076
0.1368
--
99.0
X Ray Diffraction
2.3491
2.4728
--
255
2277
0.11
0.1433
--
98.0
X Ray Diffraction
2.4728
2.6277
--
254
2288
0.1158
0.1409
--
98.0
X Ray Diffraction
2.6277
2.8304
--
251
2307
0.1193
0.1374
--
98.0
X Ray Diffraction
2.8304
3.1149
--
259
2308
0.1313
0.156
--
98.0
X Ray Diffraction
3.1149
3.5648
--
260
2351
0.1421
0.1581
--
99.0
X Ray Diffraction
3.5648
4.4884
--
264
2370
0.1253
0.137
--
99.0
X Ray Diffraction
4.4884
28.1613
--
277
2481
0.1664
0.1767
--
97.0
RMS Deviations
Key
Refinement Restraint Deviation
f_chiral_restr
0.079
f_plane_restr
0.007
f_bond_d
0.008
f_dihedral_angle_d
14.683
f_angle_d
1.251
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms
Numbers
Protein Atoms
3162
Nucleic Acid Atoms
0
Heterogen Atoms
65
Solvent Atoms
590
Software
Software
Software Name
Purpose
CBASS
data collection
PHASER
phasing
PHENIX
refinement version: (phenix.refine: 1.8_1069)
HKL-2000
data reduction
HKL-2000
data scaling